DY258138

Overview
NameDY258138
Unique NameDY258138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1340
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9991 contig Ccv1_Contig9991:4..1343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258138 vs. ExPASy Swiss-Prot
Match: ATB14_ARATH (Homeobox-leucine zipper protein ATHB-14 OS=Arabidopsis thaliana GN=ATHB-14 PE=1 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 8.251e-98
Identity = 187/297 (62.96%), Postives = 225/297 (75.76%), Query Frame = 2
Query:    2 HLLQICSGVDENAVGACSELVFAPIDEMFPDDGPLLPSGFRIIPLDSKTPDTPDTLTAHRTLDLTSSLEVGPATNPAAGDSSSCHHTRSVLTIAFQFPFESNLQDNVATMARQYVRSVISSVQRVAMAICPSGLSPTLGPKLSPGSPEALTLAHWICQSYSYHLGAELLRSDS-VGGDSVLKNLWQHSDAILCCSLKS--MPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWKVLAPEDNTVHCXAFSFINWSF 883
            +LLQ+CSGVDEN VG C++LVFAPIDE F DD PLLPSGFRIIPL+ K+  TP+  +A+RTLDL S+LE G        D + C+  RSVLTIAFQF F+++ +D+VA+MARQYVRS++ S+QRVA+AI P   S  + P   P SPEALTL  WI +SYS H GA+L  SDS   GD++L  LW HSDAILCCSLK+   PVF FANQ GLDMLETTLVALQDI LDK  DE GRKALC++F K+MQQG+ +LPAG+C S+MGR VSYEQA  WKVL  +D + HC AF F+NWSF
Sbjct:  561 YLLQLCSGVDENVVGGCAQLVFAPIDESFADDAPLLPSGFRIIPLEQKS--TPNGASANRTLDLASALE-GSTRQAGEADPNGCNF-RSVLTIAFQFTFDNHSRDSVASMARQYVRSIVGSIQRVALAIAPRPGS-NISPISVPTSPEALTLVRWISRSYSLHTGADLFGSDSQTSGDTLLHQLWNHSDAILCCSLKTNASPVFTFANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQGYAHLPAGVCASSMGRMVSYEQATVWKVL-EDDESNHCLAFMFVNWSF 851          
BLAST of DY258138 vs. ExPASy Swiss-Prot
Match: ATBH9_ARATH (Homeobox-leucine zipper protein ATHB-9 OS=Arabidopsis thaliana GN=ATHB-9 PE=1 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 1.115e-94
Identity = 186/298 (62.42%), Postives = 226/298 (75.84%), Query Frame = 2
Query:    2 HLLQICSGVDENAVGACSELVFAPIDEMFPDDGPLLPSGFRIIPLDSKTPDTPDTLTAHRTLDLTSSLEVGPATNPAAGDSSSCHHTRSVLTIAFQFPFESNLQDNVATMARQYVRSVISSVQRVAMAICPSGLSPTLGPKLSPGSPEALTLAHWICQSYSYHLGAELLRSDS--VGGDSVLKNLWQHSDAILCCSLKS--MPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWKVLAPEDNTVHCXAFSFINWSF 883
            +LLQ+CSGVDEN VG C++LVFAPIDE F DD PLLPSGFR+IPLD KT +  D  +A RT DL SSL+    T     DS +  ++R VLTIAFQF F+++ +DNVATMARQYVR+V+ S+QRVA+AI P   S  L     P SPEALTL  WI +SYS H GA+L  +DS   GGD++LK LW HSDAILCCSLK+   PVF FANQAGLDMLETTLVALQDI LDK  D+SGR+ALC++FAK+MQQG+  LPAGIC+S+MGR VSYEQA  WKV+  ++ + HC AF+ ++WSF
Sbjct:  557 YLLQLCSGVDENVVGGCAQLVFAPIDESFADDAPLLPSGFRVIPLDQKT-NPNDHQSASRTRDLASSLDGSTKT-----DSET--NSRLVLTIAFQFTFDNHSRDNVATMARQYVRNVVGSIQRVALAITPRPGSMQL-----PTSPEALTLVRWITRSYSIHTGADLFGADSQSCGGDTLLKQLWDHSDAILCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQGYANLPAGICVSSMGRPVSYEQATVWKVV-DDNESNHCLAFTLVSWSF 840          
BLAST of DY258138 vs. ExPASy Swiss-Prot
Match: ATHB8_ARATH (Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 6.332e-90
Identity = 179/296 (60.47%), Postives = 224/296 (75.68%), Query Frame = 2
Query:    5 LLQICSGVDENAVGACSELVFAPIDEMFPDDGPLLPSGFRIIPLDSKTPDTPDTLTAHRTLDLTSSLEVGPATNPAAGDS-SSCHHTRSVLTIAFQFPFESNLQDNVATMARQYVRSVISSVQRVAMAICPSGLSPTLGPKLSPGSPEALTLAHWICQSYSYHLGAELLRSDSVGGDSVLKNLWQHSDAILCCSLKSM-PVFIFANQAGLDMLETTLVALQDITLDKIFD-ESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWKVLAPEDNTVHCXAFSFINWSF 883
            LLQ+CSGVDENAV +C+EL+FAPID  F DD P++PSGFRIIPLDSK+    + L+ +RTLDL S+L+VG  T   AGDS  S  +++SV+TIAFQ  FE ++Q+NVA+MARQYVRSVI+SVQRVA+A+ PS      G +  P SPEA TLA WI  SY  +LG +LL+     G  +LK+LW H DA++CCSLK++ PVF FANQAGLDMLETTLVALQDITLDKIFD  +G+K L ++F ++MQQGF  +  GICMS+MGR V+YE+AV WKVL  +D   HC  F F+NWSF
Sbjct:  549 LLQMCSGVDENAVESCAELIFAPIDASFSDDAPIIPSGFRIIPLDSKS----EGLSPNRTLDLASALDVGSRT---AGDSCGSRGNSKSVMTIAFQLAFEMHMQENVASMARQYVRSVIASVQRVALALSPSS-HQLSGLRPPPASPEAHTLARWISHSYRCYLGVDLLKPH---GTDLLKSLWHHPDAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVL-NDDEDPHCICFMFLNWSF 832          
BLAST of DY258138 vs. ExPASy Swiss-Prot
Match: HOX29_ORYSI (Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. indica GN=HOX29 PE=2 SV=2)

HSP 1 Score: 323.168 bits (827), Expect = 2.252e-87
Identity = 168/311 (54.02%), Postives = 218/311 (70.10%), Query Frame = 2
Query:    5 LLQICSGVDENAVGACSELVFAPIDEMFPDDGPLLPSGFRIIPLDSKTPDTPDTLTAHRTLDLTSSLEV------------GPATNPAAGDSSSCHHTRSVLTIAFQFPFESNLQDNVATMARQYVRSVISSVQRVAMAICPSGLSP----TLGPKLSPGSPEALTLAHWICQSYSYHLGAELLRSDSVGG--DSVLKNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWKVLAPEDNTVHCXAFSFINWSF 883
            LLQ+ +GV+E++ G CSEL+FAPID  F DD PLLPSGFRIIP+DS      DT + + TLDL S+LE             G  T  AA  SSS   +++V+TIAFQF F+ +LQD+VA MARQY+R++ISSVQR+A+A+  S L P        +LSP +PEA TL  WICQSY +H GAEL++S       +S+LK +W H  AILCCSLK+MPVF FANQ+GLDMLETTLVALQD+TL+K+FD+ GRK LC +   +M+QG   +  G+C+S++GR  SYE+AVAWKV+  +    HC +F FINW+F
Sbjct:  557 LLQMYNGVEESSAGTCSELIFAPIDASFSDDSPLLPSGFRIIPIDSPL----DTSSPNCTLDLASTLEAATPRSRISGVNGGGGTCAAAAASSS---SKAVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAAAAAAQLSPVTPEAATLPRWICQSYRFHFGAELIKSVDANSSNESILKAVWHHPSAILCCSLKAMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSSVGRAASYEKAVAWKVVDGDGGGAHCISFMFINWTF 860          
BLAST of DY258138 vs. ExPASy Swiss-Prot
Match: HOX29_ORYSJ (Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. japonica GN=HOX29 PE=2 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 7.245e-86
Identity = 161/308 (52.27%), Postives = 215/308 (69.81%), Query Frame = 2
Query:    5 LLQICSGVDENAVGACSELVFAPIDEMFPDDGPLLPSGFRIIPLDSKTPDTPDTLTAHRTLDLTSSLEVGPATNPAAG---------DSSSCHHTRSVLTIAFQFPFESNLQDNVATMARQYVRSVISSVQRVAMAICPSGLSP----TLGPKLSPGSPEALTLAHWICQSYSYHLGAELLRSDSVGG--DSVLKNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWKVLAPEDNTVHCXAFSFINWSF 883
            LLQ+ +GV+E++ G CSEL+FAPID  F DD PLLPSGFRIIP+DS      DT + + TLDL S+LE     +  +G          +++   +++V+TIAFQF F+ +LQD+VA MARQY+R++ISSVQR+A+A+  S L P        +LSP +PEA TL  WICQSY +H G EL++S       +S+LK +W H  AILCCSLK+MPVF FANQ+GLDMLETTLVALQD+TL+K+FD+ GRK LC +   +M+QG   +  G+C+S++GR  SYE+AVAWKV+  +    HC  F FINW+F
Sbjct:  564 LLQMYNGVEESSAGTCSELIFAPIDASFSDDSPLLPSGFRIIPIDSPL----DTSSPNCTLDLASTLEAATPRSRISGVNGGGGGCAAAAASSSSKAVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQLSPVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSSVGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTF 867          
The following BLAST results are available for this feature:
BLAST of DY258138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ATB14_ARATH8.251e-9862.96Homeobox-leucine zipper protein ATHB-14 OS=Arabido... [more]
ATBH9_ARATH1.115e-9462.42Homeobox-leucine zipper protein ATHB-9 OS=Arabidop... [more]
ATHB8_ARATH6.332e-9060.47Homeobox-leucine zipper protein ATHB-8 OS=Arabidop... [more]
HOX29_ORYSI2.252e-8754.02Homeobox-leucine zipper protein HOX29 OS=Oryza sat... [more]
HOX29_ORYSJ7.245e-8652.27Homeobox-leucine zipper protein HOX29 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BA01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258138 ID=DY258138; Name=DY258138; organism=Citrus clementina; type=EST; length=1340bp
TCATCTACTTCAGATATGCAGCGGGGTTGATGAAAATGCCGTGGGAGCAT
GTTCTGAACTTGTCTTTGCTCCTATTGATGAGATGTTTCCAGATGATGGT
CCATTGTTGCCCTCTGGTTTCCGCATTATCCCATTGGATTCAAAAACACC
TGATACACCGGATACGTTGACCGCACATAGAACCCTAGATCTGACATCCA
GTCTTGAAGTTGGCCCGGCAACGAACCCCGCTGCAGGAGATTCTTCATCG
TGCCATCACACCCGATCAGTATTGACTATTGCTTTCCAGTTCCCTTTTGA
GAGCAATCTACAAGATAATGTAGCAACCATGGCACGTCAGTATGTCCGTA
GTGTAATTTCATCTGTTCAGAGGGTGGCCATGGCCATATGTCCGTCAGGA
TTGAGCCCAACTTTGGGACCAAAGCTTTCGCCGGGCTCTCCAGAAGCGCT
TACACTAGCTCACTGGATCTGCCAGAGCTATAGTTATCATTTGGGGGCAG
AATTGTTGAGATCTGATTCTGTTGGTGGTGACTCAGTGTTGAAAAATCTT
TGGCAGCATTCAGATGCTATATTGTGTTGCTCATTAAAGTCAATGCCAGT
TTTCATCTTTGCAAACCAAGCTGGCCTTGACATGCTGGAGACAACTCTAG
TGGCTCTACAAGATATCACACTGGATAAGATCTTCGATGAATCTGGGCGC
AAGGCATTGTGTGCTGATTTTGCCAAGTTGATGCAACAGGGATTTACCTA
CTTGCCGGCTGGCATCTGTATGTCGACAATGGGCCGACATGTCTCATACG
AACAAGCCGTTGCATGGAAAGTTCTTGCTCCTGAAGATAACACTGTCCAC
TGTNCTGCTTTCTCTTTCATAAACTGGTCTTTTGGGTGAACTTTTTAATT
TATTTTATCAACGCCTTTTTGCCCCGTATAAATAATGAAATGGCCAAAAA
TTTCCAAAAAAAAAATTTTGTGCTATTAAATCCCAGCCTTAAGGTTTGCA
TTATATAAATTAAATTTAATTTGTTGTTTTATTTCGGGCATACCTTTCCT
TTTTGGACCCCGTTTTTTTTTTAACTTTTGGAAACTTGGGGAAATGGAGT
CTTTACCTGGGGTTTTTGTTAAACCCCTTCCAAAAAAAAAACTTTTAGGG
GTTCCCCGGGCCTCCCCCTAATAATTTTTTAAATTTCTTTTTCCAAAATT
TCCCCCCTTTTCCCCATAAAAAAATACAAAAACAAAATGTTATGGTAAAA
AAAAAAATTTTTGTAAATAATATTTTAAATTTTTTTGTGCCCCCCAACCG
AAAAAAAATCTTTGGTCCTCTCCAGGTGGGGGGCGCCGTG
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