DY258145

Overview
NameDY258145
Unique NameDY258145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15091 contig Ccv1_Contig15091:1124..1942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 4.696e-78
Identity = 140/228 (61.40%), Postives = 172/228 (75.44%), Query Frame = 1
Query:    1 VGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 684
            VG+GF+A+DI FQNTAGP K+QAVALR+GAD +    C + AYQDTLY H+ RQF+ +  I GTVDFIFGNAA V QNC++  RK   GQ+N +TAQGRTDPNQNTG  IQ   I A++DL+ V+ +F +YLGRPWKEYSRTV+M+S I+D+I PAGW EWD +FAL TLFYGE++N G G+GTS R KW G+ VITS   A+ FT    I G SWLGSTG  ++ GL
Sbjct:  316 VGDGFIAQDICFQNTAGPEKYQAVALRIGADETVINRCRIDAYQDTLYPHNYRQFYRDRNITGTVDFIFGNAAVVFQNCNLIPRKQMKGQENTITAQGRTDPNQNTGTSIQNCEIFASADLEPVEDTFKSYLGRPWKEYSRTVVMESYISDVIDPAGWLEWDRDFALKTLFYGEYRNGGPGSGTSERVKWPGYHVITSPEVAEQFTVAELIQGGSWLGSTGVDYTAGL 543          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.366e-77
Identity = 138/227 (60.79%), Postives = 166/227 (73.13%), Query Frame = 1
Query:    4 GEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 684
            G GF+ RD+TF+N AGP+KHQAVALRVG D +  Y C+++ YQD LYVHSNRQFF  C I GTVDFIFGNAA +LQ+C+I+ARKP + QK  +TAQ R DPNQNTGI I   ++ AT DL+  +GS+PTYLGRPWK YSR V M S + D I P GW EW+G FAL++L+YGE+ N G G+G   R KW G+ VITS  EA  FT   FI+GSSWL STG  F  GL
Sbjct:  359 GAGFIVRDMTFENYAGPAKHQAVALRVGGDHAVVYRCNIIGYQDALYVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMAQQKITITAQNRKDPNQNTGISIHACKLLATPDLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSFFSGL 585          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 288.115 bits (736), Expect = 3.975e-77
Identity = 142/228 (62.28%), Postives = 165/228 (72.37%), Query Frame = 1
Query:    1 VGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 684
            VG+GF+ +DI  QNTAGP+K QAVALRVGAD+S    C + AYQDTLY HS RQF+ +  + GTVDFIFGNAA V Q C + ARKP   Q+NMVTAQGRTDPNQ TG  IQ   I A+SDL+ V   FPTYLGRPWKEYSRTV+M+S +  LI+PAGW EWDG+FAL TL+YGE  N+G GAGTS R KW G+ VIT   +A  FT    I G SWL STG  +  GL
Sbjct:  317 VGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL 544          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 8.856e-77
Identity = 141/228 (61.84%), Postives = 164/228 (71.93%), Query Frame = 1
Query:    1 VGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 684
            VG+GF+ +DI  QNTAGP+KHQAVALRVGAD S    C + AYQDTLY HS RQF+ +  + GT+DFIFGNAA V Q C + ARKP   Q+NMVTAQGRTDPNQ TG  IQ   I A+SDL+ V   FPTYLGRPWK+YSRTV+M+S +  LI+PAGW EWDG+FAL TL+YGE  N+G GAGTS R KW G+  IT   EA  FT    I G SWL STG  +  GL
Sbjct:  321 VGKGFILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCKLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKKYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHCITDPAEAMPFTVAKLIQGGSWLRSTGVAYVDGL 548          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.973e-76
Identity = 135/227 (59.47%), Postives = 164/227 (72.25%), Query Frame = 1
Query:    4 GEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 684
            G+GF ARDITF+NTAGP KHQAVALRV +DLS FY C    YQDTL+ HS RQF+ +  I GT+DFIFG+AAAV QNCDI  R+P   Q NM+TAQGR DP+ N+GI IQ SRI A  + + V+G F +YLGRPWK+YSRTV +++ I +LI P GW EW G++AL+TL+YGE  N+GAGAGT  R  W GF V+    EA  FT   FI G SW+  TG PFS G+
Sbjct:  293 GDGFWARDITFENTAGPHKHQAVALRVSSDLSLFYRCSFKGYQDTLFTHSLRQFYRDRHIYGTIDFIFGDAAAVFQNCDIFVRRPMDHQGNMITAQGRDDPHTNSGISIQHSRIRAAPEFEAVKGRFKSYLGRPWKKYSRTVFLKTDIDELIDPRGWREWSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEASPFTVSRFIQGDSWIPITGVPFSAGV 519          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 5.740e-76
Identity = 140/223 (62.78%), Postives = 164/223 (73.54%), Query Frame = 1
Query:    4 GEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPF 672
            G+GF+A+DI FQNTAGP+KHQAVALRV AD +    C + AYQDTLY H+ RQF+ +  I GTVDFIFGN+A V QNCDI AR P +GQKNM+TAQGR D NQNT I IQK +I A+SDL  V+GS  T+LGRPWK YSRTVIMQS I + I PAGW  WDG FAL+TL+YGE+ N+G GA TS R  WKGF+VI  + EA+ FT    I G  WL  TG  F
Sbjct:  331 GDGFMAQDIWFQNTAGPAKHQAVALRVSADQTVINRCRIDAYQDTLYTHTLRQFYRDSYITGTVDFIFGNSAVVFQNCDIVARNPGAGQKNMLTAQGREDQNQNTAISIQKCKITASSDLAPVKGSVKTFLGRPWKLYSRTVIMQSFIDNHIDPAGWFPWDGEFALSTLYYGEYANTGPGADTSKRVNWKGFKVIKDSKEAEQFTVAKLIQGGLWLKPTGVTF 553          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 3.721e-75
Identity = 139/228 (60.96%), Postives = 162/228 (71.05%), Query Frame = 1
Query:    1 VGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 684
            VG+GF+ +DI  QNTAGP+KHQAVALRVGAD S    C + AYQDTLY HS RQF+ +  + GT+DFIFGNAA V Q C + ARKP   Q+NMVTAQGRTDPNQ TG  IQ   I A+ DLK V   FPTYLGRPWK+YSRTV+M+S +  LI P+GW EW G+FAL TL+YGE  N+G GAGTS R KW G+ VIT   EA +FT    I G SWL ST   +  GL
Sbjct:  321 VGKGFILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCDIIASPDLKPVVKEFPTYLGRPWKKYSRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVAKLIQGGSWLRSTDVAYVDGL 548          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.150e-74
Identity = 138/228 (60.53%), Postives = 159/228 (69.74%), Query Frame = 1
Query:    1 VGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 684
            VG+GF+ +DI  QNTAGP K QAVALRVGAD+S    C + AYQDTLY HS RQF+ +  + GTVDFIFGNAA V Q C I ARKPN  QKNMVTAQGRTDPNQ TG  IQ   I A+ DL+ V   + TYLGRPWK++SRTV+MQS +   I P+GW EW G+FAL TL+YGE  N+G GAGTS R KW G+ VIT   EA  FT    I G SWL ST   +  GL
Sbjct:  315 VGQGFILQDICIQNTAGPEKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQIVARKPNKRQKNMVTAQGRTDPNQATGTSIQFCDIIASPDLEPVMNEYKTYLGRPWKKHSRTVVMQSYLDGHIDPSGWFEWRGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPNEAMPFTVAELIQGGSWLNSTSVAYVEGL 542          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.150e-74
Identity = 134/227 (59.03%), Postives = 158/227 (69.60%), Query Frame = 1
Query:    4 GEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 684
            G GF+ARDITFQNTAGP KHQAVA+R   DL  FY C M  YQDTLY HS RQFF  C+I GTVDFIFG+A AV Q+C I A++    QKN +TAQGR DPN+ TG  IQ S I A +DL L   +  TYLGRPWK YSRTV MQ+ ++D I+P GW EW+GNFAL+TL+YGE+ NSG GA    R KW G+ V+ ++ EA  FT    I G+ WL STG  F  GL
Sbjct:  299 GRGFIARDITFQNTAGPEKHQAVAIRSDTDLGVFYRCAMRGYQDTLYAHSMRQFFRECIITGTVDFIFGDATAVFQSCQIKAKQGLPNQKNSITAQGRKDPNEPTGFTIQFSNIAADTDLLLNLNTTATYLGRPWKLYSRTVFMQNYMSDAINPVGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVLNTSAEANNFTVSQLIQGNLWLPSTGITFIAGL 525          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 9.164e-74
Identity = 133/225 (59.11%), Postives = 164/225 (72.89%), Query Frame = 1
Query:    4 GEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQ-GSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFS 675
            G GF+ARDITF+NTAGP KHQAVALR  +DLS FY C++  YQDTLY H+ RQF+ +C I+GTVDFIFG+A  V QNC I A+K    QKN +TAQGR DPN+ TGI IQ   I A SDL+     S PTYLGRPWK YSRTVIMQS ++++I P GW EW+G+FALN+LFYGE+ N G GAG   R KW G++V   +T+A+ +T   FI G+ WL STG  ++
Sbjct:  293 GRGFIARDITFENTAGPEKHQAVALRSDSDLSVFYRCNIRGYQDTLYTHTMRQFYRDCKISGTVDFIFGDATVVFQNCQILAKKGLPNQKNSITAQGRKDPNEPTGISIQFCNITADSDLEAASVNSTPTYLGRPWKLYSRTVIMQSFLSNVIRPEGWLEWNGDFALNSLFYGEYMNYGPGAGLGSRVKWPGYQVFNESTQAKNYTVAQFIEGNLWLPSTGVKYT 517          
The following BLAST results are available for this feature:
BLAST of DY258145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME1_FICAW4.696e-7861.40Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME61_ARATH1.366e-7760.79Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME1_SOLLC3.975e-7762.28Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME22_SOLLC8.856e-7761.84Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME36_ARATH1.973e-7659.47Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME18_ARATH5.740e-7662.78Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME21_SOLLC3.721e-7560.96Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME3_SOLLC3.150e-7460.53Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME32_ARATH3.150e-7459.03Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME_PRUPE9.164e-7459.11Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BB02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258145 ID=DY258145; Name=DY258145; organism=Citrus clementina; type=EST; length=819bp
GTTGGTGAAGGATTCTTGGCCCGAGACATTACATTCCAAAACACAGCAGG
CCCCTCAAAGCACCAGGCAGTGGCACTGCGAGTGGGAGCTGACCTTTCAG
CATTTTACAATTGCGATATGTTAGCTTACCAAGACACACTCTACGTCCAC
TCGAACCGCCAGTTCTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTT
CATTTTTGGTAATGCTGCAGCCGTGTTACAAAATTGTGACATCCATGCAC
GAAAGCCCAATTCCGGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACT
GACCCTAACCAAAACACCGGCATTGTCATTCAAAAATCTAGGATTGGTGC
CACCTCCGATTTAAAACTGGTTCAGGGTAGTTTCCCGACGTACCTCGGCA
GGCCCTGGAAGGAGTACTCGAGGACGGTGATCATGCAGTCGTCGATTACT
GACTTGATCCACCCTGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTT
GAACACATTGTTTTACGGAGAGCATCAGAACAGCGGAGCCGGTGCCGGAA
CTTCAGGGAGAGCGAAATGGAAGGGATTTAGGGTTATTACAAGTGCTACC
GAGGCTCAAGCTTTTACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCT
GGGCTCCACTGGTTTCCCATTCTCCCTTGGTTTGTAATATTCACTAGGAG
TTTTAATTAATATGTTTTGTATTAGTGGATCCATCGATCTCGGGTCTTTC
AATTTGTAATATTTGATTGAGCGTGTCTTATTCGTGGCTTCAATCTCACA
AATACTATTGTGTGATTTA
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