DY258145

Overview
NameDY258145
Unique NameDY258145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15091 contig Ccv1_Contig15091:1124..1942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.128e-47
Identity = 102/227 (44.93%), Postives = 134/227 (59.03%), Query Frame = 1
Query:    7 EGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDP-NQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 684
            EGF+A+ I F+NTAGP  HQAVA+RV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFIFG +A V+QN  I  RK N GQ N VTA G         GIV+Q  RI     L   +    +YLGRPWK++S TVI+ S I D+I P GW  WDG     +  Y E+ N G GA T+ R  W   ++  SA E   FT  +++   +W+     P +LGL
Sbjct:  371 EGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKGNKGQFNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLAAERLIVESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVANWLGPINWIQEANVPVTLGL 595          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.938e-45
Identity = 96/227 (42.29%), Postives = 133/227 (58.59%), Query Frame = 1
Query:    7 EGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQ-NTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 684
            EGF+A+ I FQNTAGP  +QAVA RV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFI G +A V+QN  I  RK + GQ N VTA G+        GIV+   RI A  +L+  + +  +YLGRPWK ++ T ++ + I DLI P GW+EW G     T  Y E  N G GA  + R  W   ++  SA E + FT  +++  ++W+        LGL
Sbjct:  347 EGFMAKWIGFQNTAGPLGNQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.397e-44
Identity = 84/155 (54.19%), Postives = 108/155 (69.68%), Query Frame = 1
Query:   10 GFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGW 474
            GF+A+D+  +NTAGP K QAVALR+  D++  Y C + AYQDTLY +S RQF+ +C I GTVDFIFG AAAV Q C I ARKP  GQ N++TAQ R +    +G   QK  I A+SDL  ++G+  T+LGRPW+ +SR V M+S I D+I  AGW
Sbjct:  132 GFMAQDLCIRNTAGPEKRQAVALRISTDMTIIYRCRIDAYQDTLYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGW 286          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.959e-37
Identity = 89/218 (40.83%), Postives = 123/218 (56.42%), Query Frame = 1
Query:   13 FLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWL 651
            F+A++ITF+NT      G    QAVALRV AD +AF+ C ML  QDTLY H  R ++ +C I G+VDFIFGNA ++ + C +HA     G    VTAQGR+   ++TG    K ++  T  L         YLGR W  +SR V   + + ++I P GW+ W       T+FYG+++ +GAGA   GR  W   R +T   EA+ F   +FI GS W+
Sbjct:  179 FVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLG---AVTAQGRSSVLEDTGFSFVKCKVTGTGVL---------YLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWA--RELTD-EEAKPFLSLTFIDGSEWI 381          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.430e-34
Identity = 80/213 (37.56%), Postives = 115/213 (53.99%), Query Frame = 1
Query:   13 FLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWL 651
            F+ R +T QN  G +  +AVALRV AD +AFY C + +YQDTL   +   +F NC I G  DFI G+A+++ + C +H+  PN+G    +TAQ RT   + +G      ++          GS  T+LGRPW  YSR V   S  ++++ P GW++W  +   NT++YGE++  G GA    R +W       S  EA  F    FI G  WL
Sbjct:  136 FVCRFLTIQNKFGTAG-RAVALRVAADKAAFYGCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNNGS---ITAQMRTSATEKSGFTFLGCKL---------TGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWS---KQLSDEEATVFLSKDFIGGKDWL 332          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.284e-32
Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = 1
Query:    4 GEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKW 570
            GE F+A +ITF+N+A     QAVA+RV AD  AFYNC  L +QDTLY+H  +Q+  +C I G+VDFIFGN+ A+L++C IH +      +  +TAQ R    ++TG V  +  I           S   YLGRPW  + R V+  + +   I   GWH W       +  + E++  G G+ +S R  W
Sbjct:  101 GEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCK-----SQGFITAQSRKSSQESTGYVFLRCVITGNGQ------SGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFYEYRCFGPGSCSSERVPW 278          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.307e-31
Identity = 83/226 (36.73%), Postives = 119/226 (52.65%), Query Frame = 1
Query:    4 GEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI--HARKPNSGQK---NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWL 651
            G  F+A++I+F N A     G    QAVA+R+  D SAF  C     QDTL+    R +F +C I G++DFIFGNA ++ Q+C I   A + + G K     VTA GR+  ++N+G       IG T  +         +LGR W+ YSR V + +++TD+I P GW+ ++      T+FYGE+  SG GA  S RA    +    + T+       SFI G  WL
Sbjct:  175 GSQFVAKNISFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHV---------WLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRAP---YVQKLNETQVALLINTSFIDGDQWL 388          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.791e-30
Identity = 80/217 (36.87%), Postives = 103/217 (47.47%), Query Frame = 1
Query:   13 FLARDITFQNT----AGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWL 651
            F A  ITF+NT    AG    QAVALR+  D + FY   +L  QDTL+  +   +F  C I G VDFIFGNA ++ Q+CDIH+     G    + A  R    ++TG       I  T  +         YLGR W  YSRTV     I D+I P GW +W        + +GE+   G GA   GR  W   + +T   E + F    FI G  WL
Sbjct:  177 FCATAITFENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFIFGNAKSLYQDCDIHSTAKRYG---AIAAHHRDSETEDTGFSFVNCDISGTGQI---------YLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPWS--KTLT-RDEVKPFLGREFIYGDQWL 378          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.031e-29
Identity = 79/222 (35.59%), Postives = 113/222 (50.90%), Query Frame = 1
Query:    4 GEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHA-RKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWL 651
            GE F A +I+F+NTA     G    QAVAL+V  D +AFY C     QDTL     R FF  C I G++DFIFGN  ++ ++C +H+  K N+     +TA G+      TG V    +I          GS   +LGR W+ Y+R +  ++ ++ ++   GW++        T++YGEH+  G GA  S R     +  + S  EA  FT  SFI G  WL
Sbjct:  126 GEKFTAYNISFKNTAPAPNPGAVDAQAVALKVVGDKAAFYGCGFYGNQDTLLDQEGRHFFKGCFIEGSIDFIFGNGRSLYEDCTLHSIAKENT--IGCITANGKDTLKDRTGFVFVNCKI---------TGSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRVT---YAKLLSDVEAAPFTNISFIDGEEWL 333          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 79/223 (35.43%), Postives = 110/223 (49.33%), Query Frame = 1
Query:   13 FLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIH--ARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGST 660
            F A +I+F+N A     G +  QAVALR+  D +AFY C     QDTL     R FF  C I G++DFIFGN  ++ Q+C I+  A+   SG    +TAQGR   ++ +G      +I          GS    LGR W  Y+  V   + ++ +I P GW+ W  +    T+ +GEH+  G GA    R     F    + +EA +F   SFI G  WL  T
Sbjct:  178 FTAYNISFKNNAPEPDPGEADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKECFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSGFSFVNCKI---------DGSGEILLGRAWGAYATVVFSNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERVL---FGKQLTDSEASSFIDVSFIDGDEWLRHT 388          
The following BLAST results are available for this feature:
BLAST of DY258145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME5_ARATH1.128e-4744.93Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME_BRACM8.938e-4542.29Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME56_ARATH3.397e-4454.19Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME53_ARATH8.959e-3740.83Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME11_ARATH1.430e-3437.56Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME31_ARATH2.284e-3238.62Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME8_ARATH4.307e-3136.73Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME62_ARATH2.791e-3036.87Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME14_ARATH4.031e-2935.59Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME15_ARATH5.264e-2935.43Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BB02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258145 ID=DY258145; Name=DY258145; organism=Citrus clementina; type=EST; length=819bp
GTTGGTGAAGGATTCTTGGCCCGAGACATTACATTCCAAAACACAGCAGG
CCCCTCAAAGCACCAGGCAGTGGCACTGCGAGTGGGAGCTGACCTTTCAG
CATTTTACAATTGCGATATGTTAGCTTACCAAGACACACTCTACGTCCAC
TCGAACCGCCAGTTCTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTT
CATTTTTGGTAATGCTGCAGCCGTGTTACAAAATTGTGACATCCATGCAC
GAAAGCCCAATTCCGGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACT
GACCCTAACCAAAACACCGGCATTGTCATTCAAAAATCTAGGATTGGTGC
CACCTCCGATTTAAAACTGGTTCAGGGTAGTTTCCCGACGTACCTCGGCA
GGCCCTGGAAGGAGTACTCGAGGACGGTGATCATGCAGTCGTCGATTACT
GACTTGATCCACCCTGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTT
GAACACATTGTTTTACGGAGAGCATCAGAACAGCGGAGCCGGTGCCGGAA
CTTCAGGGAGAGCGAAATGGAAGGGATTTAGGGTTATTACAAGTGCTACC
GAGGCTCAAGCTTTTACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCT
GGGCTCCACTGGTTTCCCATTCTCCCTTGGTTTGTAATATTCACTAGGAG
TTTTAATTAATATGTTTTGTATTAGTGGATCCATCGATCTCGGGTCTTTC
AATTTGTAATATTTGATTGAGCGTGTCTTATTCGTGGCTTCAATCTCACA
AATACTATTGTGTGATTTA
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