DY258145

Overview
NameDY258145
Unique NameDY258145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.176e-20
Identity = 64/218 (29.36%), Postives = 101/218 (46.33%), Query Frame = 1
Query:   13 FLARDITFQNTA----GPSKH-QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWL 651
            F+A +I  +NTA    G +K  QA+++R+  + +AFYNC    +QDT+   +   FF +C + GT DFIFG+  ++     +H          ++ A       + +G      ++  T            YLGR W  + + V   + +T +++P GW E        T+FYGE++ SG G   S +AK   F       EA  F    +I GS WL
Sbjct:  152 FMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGI---RVIAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPG---SHKAKRVPFTQDIDDKEANCFLSLGYIQGSKWL 355          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.535e-20
Identity = 64/218 (29.36%), Postives = 101/218 (46.33%), Query Frame = 1
Query:   13 FLARDITFQNTA----GPSKH-QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWL 651
            F+A +I  +NTA    G +K  QA+++R+  + +AFYNC    +QDT+   +   FF +C + GT DFIFG+  ++     +H          ++ A       + +G      ++  T            YLGR W  + + V   + +T +++P GW E        T+FYGE++ SG G   S +AK   F       EA  F    +I GS WL
Sbjct:  152 FMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGI---RVIAAHAGKSAEEKSGYSFVHCKVTGTGG--------GIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPG---SHKAKRVPFTQDIDDKEANRFLSLGYIQGSKWL 355          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.939e-19
Identity = 62/218 (28.44%), Postives = 103/218 (47.25%), Query Frame = 1
Query:   13 FLARDITFQNTA----GPSKH-QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWL 651
            F+A +I  +N+A    G  K  QA+++R+  + +AFYNC    YQDT+   +   FF +C I GT DFIFG+  ++     ++          ++TA       + +G      ++  T            YLGR W  + + V   + ++ +++P+GW E        T+FYGE++ +G G+    R K   +       EA+ F    +I GSSWL
Sbjct:  129 FMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQLNVVGDGI---RVITAHAGKSAAEKSGYSFVHCKVTGTGT--------GIYLGRSWMSHPKVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYKCTGTGSHKEKRVK---YTQDIDDIEAKYFISLGYIQGSSWL 332          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.030e-16
Identity = 66/227 (29.07%), Postives = 97/227 (42.73%), Query Frame = 1
Query:   28 ITFQNTAG--PSKHQ----AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKN---MVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRAKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLG 681
            ITF+NT    P+  +    AVA R+  D     +   +  QDTL+    R ++  C+I+G +DFIFG   ++ + C ++         N    +TA  R  P+   G V              V G   T LGR W   +R +  +S ++D++ P GW  W        L + E   +GAGA TS R  W       S +E   F   SFI    W+  + FP   G
Sbjct:  123 ITFKNTYNIVPNNKREIVPAVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDCT---------VTGVGKTLLGRAWGSNARVIFDRSRLSDVVLPIGWDAWRAKGNERDLTFVEAGCTGAGADTSQRVPW---LKKLSLSEVDGFASVSFIDQDGWI--SRFPIEGG 335          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.757e-16
Identity = 72/212 (33.96%), Postives = 100/212 (47.17%), Query Frame = 1
Query:   64 QAVALRV--GADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTY---LGRPW--------------KEYSRTVIMQSSITDLIHPAGWHEWDGNFAL-NTLFYG-------EHQNSGAGAGTSGRAKWKGFRVITSATEAQ 609
            QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R      SG  +       T+ NQ  G+VI  SR+   SD      S P     LGRPW                  +TV + +S+ +  H  GW +  G     NT+++        E+++ GAGA  S     K  R +T A  A+
Sbjct:  153 QAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESD------SVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDN--HIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAAVS-----KDRRQLTDAQAAE 351          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 72/212 (33.96%), Postives = 100/212 (47.17%), Query Frame = 1
Query:   64 QAVALRV--GADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTY---LGRPW--------------KEYSRTVIMQSSITDLIHPAGWHEWDGNFAL-NTLFYG-------EHQNSGAGAGTSGRAKWKGFRVITSATEAQ 609
            QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R      SG  +       T+ NQ  G+VI  SR+   SD      S P     LGRPW                  +TV + +S+ +  H  GW +  G     NT+++        E+++ GAGA  S     K  R +T A  A+
Sbjct:  153 QAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESD------SVPAKSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDN--HIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVS-----KDRRQLTDAQAAE 351          
BLAST of DY258145 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.380e-15
Identity = 40/80 (50.00%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    4 GEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI 243
            G+GF+  D+ F+NT  P K   V LRV  D+S  Y C +  YQD LY H NRQ +    +  TVDFI GNAAAV Q C I
Sbjct:  162 GDGFIRVDMCFRNTTWPVKGPVVTLRVNGDMSIIYRCRVEEYQDALYPHKNRQCYREYFLMDTVDFICGNAAAVFQFCQI 241          
The following BLAST results are available for this feature:
BLAST of DY258145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME48_ARATH1.176e-2029.36Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PPME1_ARATH1.535e-2029.36Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME63_ARATH4.939e-1928.44Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PME66_ARATH1.030e-1629.07Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH1.757e-1633.96Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD32.996e-1633.96Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME57_ARATH7.380e-1550.00Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BB02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258145 ID=DY258145; Name=DY258145; organism=Citrus clementina; type=EST; length=819bp
GTTGGTGAAGGATTCTTGGCCCGAGACATTACATTCCAAAACACAGCAGG
CCCCTCAAAGCACCAGGCAGTGGCACTGCGAGTGGGAGCTGACCTTTCAG
CATTTTACAATTGCGATATGTTAGCTTACCAAGACACACTCTACGTCCAC
TCGAACCGCCAGTTCTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTT
CATTTTTGGTAATGCTGCAGCCGTGTTACAAAATTGTGACATCCATGCAC
GAAAGCCCAATTCCGGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACT
GACCCTAACCAAAACACCGGCATTGTCATTCAAAAATCTAGGATTGGTGC
CACCTCCGATTTAAAACTGGTTCAGGGTAGTTTCCCGACGTACCTCGGCA
GGCCCTGGAAGGAGTACTCGAGGACGGTGATCATGCAGTCGTCGATTACT
GACTTGATCCACCCTGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTT
GAACACATTGTTTTACGGAGAGCATCAGAACAGCGGAGCCGGTGCCGGAA
CTTCAGGGAGAGCGAAATGGAAGGGATTTAGGGTTATTACAAGTGCTACC
GAGGCTCAAGCTTTTACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCT
GGGCTCCACTGGTTTCCCATTCTCCCTTGGTTTGTAATATTCACTAGGAG
TTTTAATTAATATGTTTTGTATTAGTGGATCCATCGATCTCGGGTCTTTC
AATTTGTAATATTTGATTGAGCGTGTCTTATTCGTGGCTTCAATCTCACA
AATACTATTGTGTGATTTA
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