DY258159

Overview
NameDY258159
Unique NameDY258159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10016 contig Ccv1_Contig10016:5..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258159 vs. ExPASy Swiss-Prot
Match: DRL20_ARATH (Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.589e-21
Identity = 60/176 (34.09%), Postives = 99/176 (56.25%), Query Frame = 3
Query:   15 HLQLFSIWDSNLEDWNV-DCAGEVQKM---------LKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSKMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSAKGRK---IVIYGEKEWWEELQWEDQATQNAFSP 503
            HL+  S+    L ++ +  C+    KM         + ++  NC  +++LT+L+F P ++ L +++  D+E+II+ EK  + GE S ++     F EL  L + +   LK+IY  PLPF  LE I I ECP L+KLPL+S+S K  +   I+   +  W+E ++W D+AT+  F P
Sbjct:  706 HLESLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKACE-GEESGILP----FPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRFLP 876          
BLAST of DY258159 vs. ExPASy Swiss-Prot
Match: DRL14_ARATH (Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 9.589e-21
Identity = 63/175 (36.00%), Postives = 97/175 (55.43%), Query Frame = 3
Query:   18 LQLFSIWDSNLEDWNVDCA-------GEVQKMLKLHFV---NCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSKMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSAKGRK---IVIYGEKEWWEELQWEDQATQNAFSP 503
            L+  S+    L ++ + C        G +   L L  V   NC  +++LT+L+F P L+ L + +  D+E+II+ EK  + GE S +    + F EL+ L + +   LK IYR PLPF  LE+I I ECP L+KLPL+S S K  +   I+ Y +  W + ++W D+AT+  F P
Sbjct:  709 LESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACE-GEDSGI----VPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADEATKKRFLP 878          
BLAST of DY258159 vs. ExPASy Swiss-Prot
Match: DRL18_ARATH (Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.136e-20
Identity = 56/136 (41.18%), Postives = 81/136 (59.56%), Query Frame = 3
Query:   96 KLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSKMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSAKGRKIVIYGEKEWWEELQWEDQATQNAFSP 503
            +L  V C ++KDLTW++F PNL  L I +  ++ EII+ EK   L  ++        F +LE L++     L+ IY  PLPFP L  I + ECPKL+KLPLN++SA   K+  +    +  EL+WED+ T+N F P
Sbjct:  753 RLDIVKCHSMKDLTWILFAPNLVVLFIEDSREVGEIINKEKATNLTSITP-------FLKLERLILCYLPKLESIYWSPLPFPLLLNIDVEECPKLRKLPLNATSAP--KVEEFRILMYPPELEWEDEDTKNRFLP 879          
BLAST of DY258159 vs. ExPASy Swiss-Prot
Match: DRL38_ARATH (Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 8.118e-20
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 3
Query:   54 DWNVDCAGEV----QKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEK-FEKLGEVSKMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSAKGRKIVIYGEKEWWEELQWEDQATQNAFS 500
            DW      E+    Q +  +    C  ++DLTWL+  P L  L +  C  MEE+IS +K   KLG  S+       F  L  LV+     L+ IY  PLPFP LE + I  CP+L++LP NS S  G ++    E++  + ++WED+AT+  FS
Sbjct:  707 DWRCTIQREIIPQFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDKAMAKLGNTSEQP-----FQNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSESTIGNQVETIIEEQVIKIVEWEDEATKQRFS 855          
BLAST of DY258159 vs. ExPASy Swiss-Prot
Match: DRL16_ARATH (Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.999e-18
Identity = 62/188 (32.98%), Postives = 90/188 (47.87%), Query Frame = 3
Query:    3 ANMEHLQLFSIWDSNLEDWNVDCAGEVQKMLKLHF---------------VNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSKMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSAK--GRKIVIYGEKEWWEELQWEDQATQNAFSPCFLP 515
            A+ME+L    + +S   + N+ C     +   LH                + C ++KDLTW++F PNL  L I +  ++ EII+ EK   L  +         F +LE L +     L+ IY  PLPFP L  I +  CPKL+KLPLN++S        +     E   EL+WED+ T+N F P   P
Sbjct:  700 ASMENLYGLLVENSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINLTSIITP------FQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLNATSVPLVEEFEIRMDPPEQENELEWEDEDTKNRFLPSIKP 881          
BLAST of DY258159 vs. ExPASy Swiss-Prot
Match: DRL17_ARATH (Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.923e-18
Identity = 53/137 (38.69%), Postives = 80/137 (58.39%), Query Frame = 3
Query:   96 KLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSKMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSS---AKGRKIVIYGEKEWWEELQWEDQATQNAF 497
            +L    C ++KDLTW++F PNL +L I +  ++ EII+ EK   L  ++        F +LE L++ N   L+ IY  PL FP L  I + +CPKL+KLPLN++S    +  +I +Y       EL+WED+ T+N F
Sbjct:  628 RLGLSKCHSIKDLTWILFAPNLVYLYIEDSREVGEIINKEKATNLTSITP-------FLKLERLILYNLPKLESIYWSPLHFPRLLIIHVLDCPKLRKLPLNATSVPLVEEFQIRMY-PPGLGNELEWEDEDTKNRF 756          
BLAST of DY258159 vs. ExPASy Swiss-Prot
Match: RPS2_ARATH (Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 40/164 (24.39%), Postives = 84/164 (51.22%), Query Frame = 3
Query:   24 LFSIWDSNLEDWNVDCAGEVQKMLKLHFVNCSNVKDLTWLVFVPNLKWLQIFNCDDMEEIISVEKFEKLGEVSKMMGEPILFSELELLVISNASNLKRIYRDPLPFPHLERIGISECPKLKKLPLNSSSAKGRKIVIYGEKEWWEELQWEDQATQNAFSPCFLP 515
            L  +W +++     DC   ++    ++  +C+ +K+++W+  +P L+ +++F+C ++EE+IS  +       S  + +P LF  L+ L   +   L  I      F  +E + I+ CP++KKLP      +     +Y E++WW+ L+ +    +  + P F+P
Sbjct:  758 LTRVWGNSVSQ---DCLRNIRC---INISHCNKLKNVSWVQKLPKLEVIELFDCREIEELISEHE-------SPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQKVETLVITNCPRVKKLPFQERRTQMNLPTVYCEEKWWKALEKDQPNEELCYLPRFVP 908          
The following BLAST results are available for this feature:
BLAST of DY258159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
DRL20_ARATH9.589e-2134.09Probable disease resistance protein At1g63360 OS=A... [more]
DRL14_ARATH9.589e-2136.00Probable disease resistance protein At1g62630 OS=A... [more]
DRL18_ARATH2.136e-2041.18Probable disease resistance protein At1g61310 OS=A... [more]
DRL38_ARATH8.118e-2036.36Probable disease resistance protein At5g47260 OS=A... [more]
DRL16_ARATH1.999e-1832.98Probable disease resistance protein At1g61190 OS=A... [more]
DRL17_ARATH9.923e-1838.69Probable disease resistance protein At1g61300 OS=A... [more]
RPS2_ARATH1.937e-1324.39Disease resistance protein RPS2 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258159 ID=DY258159; Name=DY258159; organism=Citrus clementina; type=EST; length=556bp
TAGCAAACATGGAGCATCTTCAGCTGTTCAGCATTTGGGACAGTAATTTG
GAAGACTGGAATGTCGACTGCGCGGGAGAGGTACAAAAAATGCTTAAACT
TCACTTTGTTAATTGCTCAAATGTGAAGGACTTGACGTGGCTTGTTTTTG
TTCCAAATCTCAAGTGGCTGCAAATATTTAATTGTGATGACATGGAAGAA
ATAATCAGTGTTGAAAAATTTGAAAAATTGGGTGAAGTTTCAAAGATGAT
GGGAGAGCCTATCTTGTTCTCAGAACTCGAACTTCTGGTAATAAGCAATG
CAAGTAATTTGAAGCGCATCTACCGCGATCCCTTGCCCTTTCCACACCTG
GAGCGAATTGGCATATCGGAATGCCCAAAGTTGAAGAAGCTCCCGCTCAA
TTCCAGCAGCGCAAAGGGACGTAAAATTGTCATTTACGGGGAGAAAGAAT
GGTGGGAAGAGCTTCAATGGGAGGATCAAGCCACTCAAAATGCTTTCTCG
CCCTGTTTCCTACCTTATGAATTATAATAAAGTGCAATAACAAGCAAGAC
TTTGAA
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