DY258175

Overview
NameDY258175
Unique NameDY258175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH603_RHOBA (60 kDa chaperonin 3 OS=Rhodopirellula baltica GN=groL3 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.702e-30
Identity = 82/165 (49.70%), Postives = 107/165 (64.85%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGY 497
            VGA TE+E+KEKK RVEDAL+AT+AA            LLR S KV A  +TL  D++ VG NIV RA   PL +I++NAG +G +V EKVL+   ++ GYNA T  YEDL+ +G+IDPTKV R  L +A+SVA   L SD +V E  +PE +  AG+  D+  Y
Sbjct:  380 VGAATESEMKEKKARVEDALHATRAAVEEGILPGGGVALLRASGKVKAA-DTL-TDDQLVGYNIVLRACRAPLTMISENAGQDGGIVCEKVLAMKGNE-GYNALTDVYEDLVKSGVIDPTKVTRTALGNAASVATLLLTSDALVAE--KPEKSGKAGHGGDHDMY 539          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_SYNPX (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH8102) GN=groL2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.702e-30
Identity = 76/166 (45.78%), Postives = 103/166 (62.05%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAGNPMDNSG 494
            VGA TETELK +KLR+EDALNAT+AA           TLL+L+  ++ + E L+ D+ + G  I++RAL  P+  IA NAG NG VV E + +S     G+NA TG YEDLMAAGI+D  KVVR  ++ A S+A   + ++ V+ +  EPE  P    G+PM   G
Sbjct:  379 VGAPTETELKNRKLRIEDALNATRAAIEEGIVPGGGTTLLQLADGLNGLVEQLEGDQ-RTGVEILQRALVAPVHHIATNAGHNGDVVIEAMRNSGQ---GFNALTGTYEDLMAAGIVDAAKVVRLAVQDAVSIASLLITTEVVIADKPEPEAPPVDGGGDPMGGMG 540          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.702e-30
Identity = 71/166 (42.77%), Postives = 104/166 (62.65%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VG  TE E+KE+K RV+DALNAT+AA            L++    ++ +  T DN+++ VG +IV++AL  PL+ IA+NAGV+GSVV+ K+  SD+ K+G+NA T  Y D+ A G+IDP KVVR  L+ A+S+A   + ++ +V +    E A P G   D  G G
Sbjct:  381 VGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQAGKHLEGL--TGDNNDQNVGISIVRKALEAPLRQIAENAGVDGSVVAGKIRESDDLKFGFNAQTEEYGDMFAFGVIDPAKVVRTALQDAASIAGLLITTEAMVADRPAKEGAAPGGGMPDMGGMG 544          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_RHOPB (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.702e-30
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 473
            VG  TE E+KEKK RVEDALNAT+AA            LLR    V  I    DN + + G NIV +AL  P++ IA+NAGV GS+V  K+L + +  +G++A T  Y D++A GI+DP KVVR  L+ ASSVA   + ++C+V E+ ++  PAMP G
Sbjct:  381 VGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRISN--DNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDASSVAALLVTTECMVAEMPRDAAPAMPGG 536          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_SYNSC (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9605) GN=groL1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.702e-30
Identity = 76/166 (45.78%), Postives = 103/166 (62.05%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA--GNPMDNSG 494
            VGA TETELK +KLR+EDALNAT+AA           TLL+L+  +DA+  +L+ D+ + G  IV+RAL  P+  IA NAG NG VV   + SS     G+NA +G YEDLMAAGI+D  KVVR  ++ + S+A   + ++ V+ +  EP    PA  G+PM   G
Sbjct:  379 VGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLLQLADSLDALASSLNGDQ-RTGVEIVQRALTAPIHQIATNAGQNGDVVIAGMRSSGQ---GFNALSGVYEDLMAAGIVDAAKVVRLAVQDSISIASLLITTEVVIADKPEPPAPAPAGDGDPMGGMG 540          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_BACTN (60 kDa chaperonin OS=Bacteroides thetaiotaomicron GN=groL PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.136e-29
Identity = 73/159 (45.91%), Postives = 98/159 (61.64%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 479
            VGA +E E+KEKK RV+DAL AT+AA             +R    ++ +K   DN +E  G  I+KRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YE+L AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  381 VGAASEVEMKEKKDRVDDALRATRAAIEEGIIPGGGVAYIRAIDSLEGMKG--DNADETTGIGIIKRAIEEPLREIVANAGKEGAVVVQKVREGKGD-FGYNARTDVYENLHAAGVVDPAKVARVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH603_NITHX (60 kDa chaperonin 3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL3 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.136e-29
Identity = 76/167 (45.51%), Postives = 100/167 (59.88%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAGNPMDNSGY 497
            VG  TE E+KEKK RVEDALNAT+AA            LLR    V  I    DN + + G NIV +AL  P++ IA+NAGV GS+V  KVL +    +G++A    Y D++A GIIDP KVVR  L+ A+SVA   + ++ +V E+  +EP PAMP G  M   G+
Sbjct:  381 VGGATEIEVKEKKDRVEDALNATRAAVQEGIVPGGGTALLRAKKAVGRIAN--DNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKVLENKTETFGFDAQKEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKEEPAPAMPGGGGMGGMGF 545          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_NITWN (60 kDa chaperonin 2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.136e-29
Identity = 69/160 (43.12%), Postives = 103/160 (64.38%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI---KEPEPAMPAG 473
            VG  TE E+KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G  IV++AL  P + IA NAG +GSV+  K+L  + + YG+++ TG+Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+     P PAMP G
Sbjct:  381 VGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKT--QNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGDYGNLISKGIIDPTKVVRTAIQNAASVASLLITTEAMVAELPKKNSPAPAMPGG 538          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.136e-29
Identity = 69/155 (44.52%), Postives = 103/155 (66.45%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 467
            VG  TE E+KE+K RV+DALNAT+AA            L R +  V  ++    ND++++G +IV++AL  PL+ IA+NAG +G+VV+ KVL +  + +G++A  G ++DL+AAGIIDPTKVVR  L+ A+SV    + ++ +V E  EP+PA P
Sbjct:  381 VGGSTEIEVKERKDRVDDALNATRAAVEEGIVPGGGTALARAAEVVARLQ--FHNDDQRIGGDIVRKALQAPLRQIAENAGEDGAVVAGKVLENGAYNFGFDAQIGEFKDLVAAGIIDPTKVVRTALQDAASVGSLLITTEVLVTEKAEPKPAAP 533          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_SYNPW (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH7803) GN=groL1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.136e-29
Identity = 77/165 (46.67%), Postives = 100/165 (60.61%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA-MPAGNPMDNSG 494
            VGA TETELK +KLR+EDALNAT+AA           TL++L+  +D +   L  D ++ G  IV RAL  PL+ IA NAG NG VV E+V  S     G+NA TG YE+L+ AGI+D  KVVR  L+ A S+A   + ++ VV +  EP  A  P G+PM   G
Sbjct:  379 VGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLIQLAGSLDGLANQLHGD-QRTGVEIVHRALSAPLRQIAINAGANGDVVVEQVQRSGQ---GFNALTGGYENLLEAGILDAAKVVRLGLQDAVSIASLLITTEVVVADKPEPPAAPAPGGDPMGGMG 539          
The following BLAST results are available for this feature:
BLAST of DY258175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH603_RHOBA8.702e-3049.7060 kDa chaperonin 3 OS=Rhodopirellula baltica GN=g... [more]
CH602_SYNPX8.702e-3045.7860 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH602_ROSDO8.702e-3042.7760 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH602_RHOPB8.702e-3046.2060 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_SYNSC8.702e-3045.7860 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH60_BACTN1.136e-2945.9160 kDa chaperonin OS=Bacteroides thetaiotaomicron ... [more]
CH603_NITHX1.136e-2945.5160 kDa chaperonin 3 OS=Nitrobacter hamburgensis (s... [more]
CH602_NITWN1.136e-2943.1360 kDa chaperonin 2 OS=Nitrobacter winogradskyi (s... [more]
CH602_GLUDA1.136e-2944.5260 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
CH601_SYNPW1.136e-2946.6760 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258175 ID=DY258175; Name=DY258175; organism=Citrus clementina; type=EST; length=860bp
AGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTC
GAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGT
TGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTA
AGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAAATATTGTTAAA
AGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTGTTAA
TGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATG
GATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATT
ATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGT
GGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGC
CTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGA
TACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGAC
TTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTC
TTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGA
TAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTG
CAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCC
TTCACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCAC
TGTTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGGTACATGA
TTTTACACAT
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