DY258175

Overview
NameDY258175
Unique NameDY258175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1445..2304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 78/167 (46.71%), Postives = 108/167 (64.67%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 503
            VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  ++    +  + EE +GANIV  AL  PL  IA+NAGVNG+VV+E V  + +   GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEQWAASTLSGEELIGANIVAAALTAPLMRIAENAGVNGAVVAENV-KAKSFNEGYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 82/153 (53.59%), Postives = 104/153 (67.97%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 461
            VGA TETELK++KLR+EDALNAT+AA           TLL LS  + A K  L N EE+VGA IV RAL  PL  IA NAG+ GSVV EKVL  +   +G++A TG Y D+ A GI+DP KVVR  L++A+S+A  +L ++ +VVE  EP+PA
Sbjct:  380 VGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKAKL-NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEKEM-PFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAGMYLTTEAIVVEKPEPKPA 530          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.297e-33
Identity = 77/159 (48.43%), Postives = 109/159 (68.55%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 479
            VGA TETEL+++KLR+EDA NAT AA           TL+ LS+ + AIKE L++ +E++GA+IV++AL  P  LIA+NAG+ G VV EK++ S+  + GYNA T  YE+L+ AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  P   P
Sbjct:  385 VGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSE-WEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPTAAP 540          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.694e-33
Identity = 79/159 (49.69%), Postives = 105/159 (66.04%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 479
            VGA TETE+KEKK RVEDAL+AT+AA            LLR +  +   K  +D DE+ +G +IVKRA   PL+ I  N+G  G++V +KV  + N+ YGYNAAT  YEDL+AAG+IDPTKV R  L+HA+S+A   L ++ ++ EI E + A PAG P
Sbjct:  379 VGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRAAKALATFK--VDGDEQ-IGVSIVKRACEEPLRQIVSNSGTEGAIVVDKVRENANNNYGYNAATDTYEDLVAAGVIDPTKVTRSALQHAASIAGLMLTTEAMIAEIPEKKSA-PAGGP 533          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.213e-33
Identity = 78/156 (50.00%), Postives = 107/156 (68.59%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 470
            VGA TETEL+++KLR+EDA NAT AA            L+ LS+ + AIKET ++ +E++GA+IV++AL  P  LIA+NAGV G VV EK++ SD  + GYNA T  YE+L  AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  PA
Sbjct:  425 VGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSD-WENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPA 577          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_SYNPX (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH8102) GN=groL1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.213e-33
Identity = 79/167 (47.31%), Postives = 107/167 (64.07%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 503
            VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  ++       + EE +GANIV  AL  PL  IA+NAG NG+VV+E V S    + GYNAATG+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPSLEEWANGNLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRAISE-GYNAATGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.890e-33
Identity = 82/166 (49.40%), Postives = 106/166 (63.86%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP-AGNPMDNSGY 497
            VGA TE ELKEKK RV+DA++ATKAA            + R S  +  IKE  +N ++  G  IVK A   PLK IA NAG  GSV+ EK+   DN  YG++AATG Y D++ AGIIDPTKVVR  L++A+S+A T L ++C+V EIKE E  +P AG  M +  +
Sbjct:  381 VGAATEAELKEKKDRVDDAVHATKAAVEEGIVPGGGIAIFRASRALCNIKE--ENTDKAWGIKIVKNACKVPLKQIAYNAGFEGSVIIEKIKDVDNVNYGFDAATGEYVDMVEAGIIDPTKVVRTALQNAASIAGTMLTAECLVAEIKEKEEKLPGAGGGMGDMDF 544          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.890e-33
Identity = 83/164 (50.61%), Postives = 108/164 (65.85%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 494
            VGA TETELK++KLR+EDALNATKAA           TL+ L+  ++++K  L  DEEKVGA++V  AL  PL  IA NAG  G+VV EKV  +D   YGYNA T  YED++AAG++DP KVVR  L++A S+A   L ++ +VV+  +PEPA  A   M   G
Sbjct:  379 VGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQL-KDEEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDAD-FSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEALVVD--KPEPAGAAAPDMGGMG 538          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_DESOH (60 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groL PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.775e-33
Identity = 84/168 (50.00%), Postives = 106/168 (63.10%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMDNSGYG 500
            VGA TETE+KEKK RVEDALNAT+AA            L+R    +DA+ +     EEK+G  +V RA+  PL+ IA NAGV GSVV EKV  ++   +GYNAATG+Y DL+AAG+IDPTKVVR  L++A SVA   L ++ ++ E   KE   AMP G      G G
Sbjct:  381 VGAATETEMKEKKARVEDALNATRAAVEEGVLPGGGVALVRC---LDALSKIKIKSEEKLGVKVVMRAIEEPLRRIANNAGVEGSVVIEKV-KNETGSFGYNAATGDYGDLIAAGVIDPTKVVRFALQNACSVASVMLTTEAMIAEKPSKEEPAAMPGGGMGGMGGMG 544          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.438e-33
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 482
            VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  ++    T  + EE +GANIV+ AL  PL  IA+NAG NG+VV+E V S   +  GYNAATG Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + + PAG  M
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEDWSSTNLSGEELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSPAGGGM 537          
The following BLAST results are available for this feature:
BLAST of DY258175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNPW7.605e-3446.7160 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH602_SYNJB9.933e-3453.5960 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
RUB1_BRANA1.297e-3348.43RuBisCO large subunit-binding protein subunit alph... [more]
CH60_SOLUE1.694e-3349.6960 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
RUBA_ARATH2.213e-3350.00RuBisCO large subunit-binding protein subunit alph... [more]
CH601_SYNPX2.213e-3347.3160 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH60_SULSY2.890e-3349.4060 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]
CH601_ACAM12.890e-3350.6160 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH60_DESOH3.775e-3350.0060 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]
CH602_PROM16.438e-3348.1360 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258175 ID=DY258175; Name=DY258175; organism=Citrus clementina; type=EST; length=860bp
AGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTC
GAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGT
TGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTA
AGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAAATATTGTTAAA
AGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTGTTAA
TGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATG
GATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATT
ATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGT
GGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGC
CTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGA
TACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGAC
TTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTC
TTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGA
TAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTG
CAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCC
TTCACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCAC
TGTTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGGTACATGA
TTTTACACAT
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