DY258175

Overview
NameDY258175
Unique NameDY258175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1445..2304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.173e-32
Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 470
            VGA TETEL+++KLR+EDA NAT AA            L+ LS  V AIKE L++ +E++GA+IV++AL  P  LIA+NAG+ G VV EK+ + +  + GYNA T  YE+L+ +G+IDP KV RC L++A+SVA   L +  +VVE  +P+ A+ A
Sbjct:  426 VGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGE-WEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAA 580          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_RUBXD (60 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groL PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.173e-32
Identity = 78/157 (49.68%), Postives = 103/157 (65.61%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 473
            VGA TETELKEKK RVEDAL+AT+AA            LL+    V  + + LD DE + GA IV RAL  P++ IA+NAG +GS+V +KV +  +   G+NA TG YEDL+AAG+IDP  V R  L++A+S+A   + +D VV E +E +PAMP G
Sbjct:  380 VGAATETELKEKKHRVEDALSATRAALEEGIVPGGGVALLKAQKAVGELLDELDGDE-RTGARIVYRALEEPIRQIAENAGADGSIVVDKVRAQGD-SIGFNALTGGYEDLVAAGVIDPAMVTRSALQNAASIAGLLVTTDVVVAEPEEEQPAMPGG 534          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.173e-32
Identity = 79/166 (47.59%), Postives = 107/166 (64.46%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VGA TETELK++KLR+EDALNATKAA           TLL L+ K+DAIK  L  D+EK GA+++ RAL  PL+ IA NAGV GSV+++KV   D    GY+A  G + D++AAG+ DP KVVR  L++A+S+A   L ++ ++V+  +PE         D  G G
Sbjct:  380 VGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLLHLTKKIDAIKAGL-ADDEKTGADLIARALEAPLRQIADNAGVEGSVIAQKVRELD-FNIGYDAMKGEFVDMLAAGVADPAKVVRSALQNAASIAAMVLTTEVLIVD--KPEKKKAGAGAPDMGGMG 541          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.118e-32
Identity = 80/163 (49.08%), Postives = 105/163 (64.42%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 482
            VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  +        + EE +GANIV +AL  PLK IA+NAG NGSVV+E V     HK    G+NAA+  Y D++AAGIIDP KV R  L++A+S+A   L ++C+VV++ E + A PAG  M
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALTEWANQNLSGEELIGANIVAQALDAPLKRIAENAGANGSVVAENV----RHKPFSEGFNAASNEYVDMLAAGIIDPAKVTRSGLQNAASIAGMVLTTECIVVDLPEKKEAAPAGGGM 537          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.118e-32
Identity = 74/157 (47.13%), Postives = 106/157 (67.52%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 473
            VGA TETELKE+KLR+EDALNAT+A            +L+ +   V+A+ ET + DE + G  I++RAL  PL+ IA NAG+ GSV+ EKV+SS+    G++A T  Y +++ AGI+DPTKV R  L++A+SV+   L ++  +V+IK  EP+MP G
Sbjct:  379 VGAATETELKERKLRIEDALNATRAGVEEGMVAGGGASLVHVIPAVEALLETTEGDE-RTGVKIIRRALEEPLRQIAANAGLEGSVIVEKVMSSEKG-IGFDALTEKYVNMIEAGIVDPTKVTRSALQNAASVSAMLLTTEGAIVDIKSDEPSMPGG 533          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.118e-32
Identity = 76/167 (45.51%), Postives = 107/167 (64.07%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 503
            VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  +    +   + EE +GANIV+ +L  PL  IA+NAG NG+V++E V S   +  G+NAATG+Y D+ AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG P     + Y
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPILKEWADKALSGEELIGANIVEASLTSPLMRIAENAGSNGAVIAENVKSKPFND-GFNAATGDYVDMSAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGAPGMGGDFDY 544          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.118e-32
Identity = 76/157 (48.41%), Postives = 108/157 (68.79%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 473
            VGA TETELK++KLR+EDA+NATKAA            LL L++ +    ++L   EEK+GA I+++AL  PL+ IA+NAG+ GSV++EKV + +   +G+NA T  YEDL+AAGIIDP KV R  L++A+S+A   L ++C+VV+ K  +   PAG
Sbjct:  379 VGAATETELKDRKLRIEDAVNATKAAIAEGIVPGGGTALLHLAAGMGGFIDSLSG-EEKIGARIIQKALEGPLRQIAENAGLEGSVIAEKVRNLE-FNFGFNAMTNEYEDLVAAGIIDPVKVTRSALQNAASIAAMVLTTECIVVD-KPEDDKTPAG 532          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.118e-32
Identity = 76/167 (45.51%), Postives = 104/167 (62.28%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 503
            VGA TETE+K+KKLR+EDA+NATKAA           TL  L+ +++    +   DEE  GA IV RAL  PLK IA+NAG NG+V++E+V        G+NAAT  + D+  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+ A PAG       + Y
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEVWANSNLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERV-KEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDAAPAGAGAGGGDFDY 544          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_SORC5 (60 kDa chaperonin 1 OS=Sorangium cellulosum (strain So ce56) GN=groL1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.297e-32
Identity = 79/166 (47.59%), Postives = 107/166 (64.46%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VGA TETE+KEKK RVEDAL+AT+AA            L R ++ ++++K    NDE  VG  +V+RA+  PL+ IA+NAGV+G+VV+EKV S     +GYNAAT +YEDL+A G+IDP KVVR  + +A+SVA   L ++ +V E  + E A   G P    G G
Sbjct:  381 VGAATETEMKEKKARVEDALHATRAAVEEGIVVGGGVALFRAAASLESLKF---NDERDVGVRLVRRAVEAPLRQIAQNAGVDGTVVAEKVRSGAP-TFGYNAATDSYEDLLAGGVIDPAKVVRHAISNAASVAALMLTTEALVAEKPKKEKAAAGGAPGGMGGMG 542          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.214e-31
Identity = 72/152 (47.37%), Postives = 104/152 (68.42%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 458
            VGA TETEL++++LR+EDA NAT AA             + LS+ V AIKET+++ +E++GA+I+++AL  P  LIA NAGV G VV EK+  S+  + GYNA T  YE+L+ +G+IDP KV RC L++A+SV+   L +  +VVE  +P+P
Sbjct:  381 VGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESE-WEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAIVVEKPKPKP 531          
The following BLAST results are available for this feature:
BLAST of DY258175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_PEA4.173e-3248.08RuBisCO large subunit-binding protein subunit alph... [more]
CH60_RUBXD4.173e-3249.6860 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]
CH602_GLOVI4.173e-3247.5960 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH60_SYNR37.118e-3249.0860 kDa chaperonin OS=Synechococcus sp. (strain RCC... [more]
CH60_ALKOO7.118e-3247.1360 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH602_PROMP7.118e-3245.5160 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]
CH601_GLOVI7.118e-3248.4160 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH601_ANAVT7.118e-3245.5160 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH601_SORC59.297e-3247.5960 kDa chaperonin 1 OS=Sorangium cellulosum (strai... [more]
RUBA_WHEAT1.214e-3147.37RuBisCO large subunit-binding protein subunit alph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258175 ID=DY258175; Name=DY258175; organism=Citrus clementina; type=EST; length=860bp
AGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTC
GAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGT
TGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTA
AGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAAATATTGTTAAA
AGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTGTTAA
TGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATG
GATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATT
ATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGT
GGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGC
CTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGA
TACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGAC
TTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTC
TTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGA
TAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTG
CAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCC
TTCACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCAC
TGTTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGGTACATGA
TTTTACACAT
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