DY258175

Overview
NameDY258175
Unique NameDY258175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1445..2304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_DESAA (60 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groL PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.870e-31
Identity = 77/170 (45.29%), Postives = 105/170 (61.76%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE----PAMPAGNPMDNSGYG 500
            VGA TE E+KEKK RVEDALNAT+AA            L+R    +DA+ +     E+K+GA +V RAL  PL++IA NAG+ GSVV +KV +++   +GYNA T  YEDL+ AG+IDPTKVVR  L++A S+A   L ++ ++ +  +      PAMP G      G G
Sbjct:  380 VGAATEVEMKEKKARVEDALNATRAAVEEGIVPGGGVALVRA---IDAVAKAKITGEQKIGARVVMRALEAPLRMIANNAGMEGSVVLDKVKNTEG-SFGYNADTDTYEDLIEAGVIDPTKVVRLALQNACSIAGLMLTTEAMIADKPDENAGGMPAMPGGGMGGMGGMG 545          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_BACFR (60 kDa chaperonin OS=Bacteroides fragilis GN=groL PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.870e-31
Identity = 74/159 (46.54%), Postives = 100/159 (62.89%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 479
            VGA +E E+KEKK RV+DAL AT+AA             +R    +D +K   +ND+E  G  I+KRA+  PL+ I  NAG  G+VV +KV S     +GYNA T  YE++ AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  381 VGAASEVEMKEKKDRVDDALRATRAAIEEGIVAGGGVAYIRAIESLDGLKG--ENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKV-SEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_BACFN (60 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=groL PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.870e-31
Identity = 74/159 (46.54%), Postives = 100/159 (62.89%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 479
            VGA +E E+KEKK RV+DAL AT+AA             +R    +D +K   +ND+E  G  I+KRA+  PL+ I  NAG  G+VV +KV S     +GYNA T  YE++ AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  381 VGAASEVEMKEKKDRVDDALRATRAAIEEGIVAGGGVAYIRAIESLDGLKG--ENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKV-SEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_SULMW (60 kDa chaperonin OS=Sulcia muelleri (strain GWSS) GN=groL PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.028e-30
Identity = 76/166 (45.78%), Postives = 106/166 (63.86%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VGA +E E+KEKK RV+DAL+AT+AA            L+R    ++ +K  +DN ++  G  IVKR+L  PL+ I  NAG  GSV+  KV    N ++GY+A  G Y+++++ GIIDPTKV R  LE+A+SV+   L ++CV+ EIK+ EPAMP    M NSG G
Sbjct:  381 VGAASEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALVRAIKSLNGLK--VDNVDQDTGIKIVKRSLQEPLRQIVANAGEEGSVIVAKVAEGKN-EFGYDAKLGEYKNMISEGIIDPTKVTRVALENAASVSGMLLTTECVITEIKKEEPAMP---QMPNSGMG 540          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_DESDA (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groL PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.028e-30
Identity = 79/166 (47.59%), Postives = 104/166 (62.65%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VGA TE E+KEKK RVEDALNAT+AA            L+R++  +  IK    +D+E  G NI++RA+  PL+ IA NAG  GS+V EKV    +  +G+NAATG YEDL+ AG+IDP KV R  L++A+SVA   L ++C + E  +PEP   A  P D  G G
Sbjct:  381 VGAATEVEMKEKKDRVEDALNATRAAVEEGIVPGGGTALIRVAKVLCDIKPA--DDDELAGVNIIRRAIEEPLRQIALNAGFEGSIVVEKVREGKDG-FGFNAATGEYEDLIKAGVIDPKKVTRTALQNAASVASLLLTTECAIAE--KPEPKKDAAMP-DMGGMG 540          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_CLOPH (60 kDa chaperonin OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=groL PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.028e-30
Identity = 75/159 (47.17%), Postives = 99/159 (62.26%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 479
            VGA TETE+KEKKLR+EDAL AT+AA             +  S +V  +   L+ DE + GA I+ +AL  PL  IA+NAG+ G+V+  KV        G+NA T  Y D++  GI+DP+KV R  L++A+SVA TFL ++  V  IKEP PAMPAG P
Sbjct:  379 VGAATETEMKEKKLRMEDALAATRAAVEEGIIAGGGSAYIHASKEVAKLAAKLEGDE-RTGAQIILKALEAPLSCIAQNAGLEGAVIVNKVREKKTG-VGFNALTEKYVDMVEDGILDPSKVTRSALQNATSVASTFLTTEAAVASIKEPAPAMPAGGP 535          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_ARCB4 (60 kDa chaperonin OS=Arcobacter butzleri (strain RM4018) GN=groL PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.028e-30
Identity = 77/165 (46.67%), Postives = 103/165 (62.42%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLD-NDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 494
            VGA TETE+KEKK RV+DAL+AT+AA            L++ S KV+     LD   +E++GA+IV RA+  PLK IA NAG +  VV+ +V  S N   G+NAATG Y D+  AGI+DP KV R  +++A SVA   L ++  V +IKE +PAMP+   M   G
Sbjct:  380 VGAATETEMKEKKDRVDDALSATRAAVEEGIVIGGGAALIKASKKVN-----LDLTGDERIGADIVLRAISAPLKQIAINAGFDAGVVANEVEKSSNENLGFNAATGEYVDMFEAGIVDPAKVERVAMQNAVSVASLLLTTEATVSDIKEDKPAMPSMPDMGGMG 539          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_ANADF (60 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.028e-30
Identity = 77/164 (46.95%), Postives = 101/164 (61.59%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 494
            VGA TETE+KEKK RVEDAL+AT+AA             LR    ++ +K +   + EK G +IV+RAL  PL+ IA N G   S+V  KV  S +  +G+NAATG+YEDL+ +G+IDPTKV R  L++ASSVA   L +  +V E  + E A PAG  M   G
Sbjct:  381 VGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVAYLRAVKALEGVKVS---EGEKFGLDIVRRALEEPLRQIAGNGGYEASIVVNKVKESKDTNFGFNAATGDYEDLVKSGVIDPTKVSRSALQNASSVASLMLTTMALVAEKPKEESAAPAGGGMGGMG 541          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.028e-30
Identity = 74/158 (46.84%), Postives = 98/158 (62.03%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 473
            VG  TE E+KEKK R++DALNAT+AA            LLR S K+ A      ND+++ G NIV+RAL  P + IA+NAG   S+V  K+L  D   YGYNA TG Y D++  GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  381 VGGSTEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKISAKGV---NDDQEAGINIVRRALQAPARQIAENAGDEASIVVGKILDKDQDNYGYNAQTGEYGDMIGMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_THEAB (60 kDa chaperonin OS=Thermosipho africanus (strain TCF52B) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.342e-30
Identity = 73/155 (47.10%), Postives = 98/155 (63.23%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 467
            VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ +   LD DE K+GA IV  AL  P+  IAKNAG +G+++  KVL +D+  YG++A  G Y ++   GIIDP KV R  L++A+S+A   L ++ +VVE  EP+   P
Sbjct:  379 VGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKAVEKVVNELDGDE-KIGAKIVYEALIAPINQIAKNAGYDGAIIIHKVLENDDPAYGFDALKGEYCNMFERGIIDPAKVTRSALQNAASIASMLLTTEALVVEKPEPKNNAP 532          
The following BLAST results are available for this feature:
BLAST of DY258175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DESAA7.870e-3145.2960 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH60_BACFR7.870e-3146.5460 kDa chaperonin OS=Bacteroides fragilis GN=groL ... [more]
CH60_BACFN7.870e-3146.5460 kDa chaperonin OS=Bacteroides fragilis (strain ... [more]
CH60_SULMW1.028e-3045.7860 kDa chaperonin OS=Sulcia muelleri (strain GWSS)... [more]
CH60_DESDA1.028e-3047.5960 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_CLOPH1.028e-3047.1760 kDa chaperonin OS=Clostridium phytofermentans (... [more]
CH60_ARCB41.028e-3046.6760 kDa chaperonin OS=Arcobacter butzleri (strain R... [more]
CH602_ANADF1.028e-3046.9560 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strai... [more]
CH601_RHIEC1.028e-3046.8460 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ... [more]
CH60_THEAB1.342e-3047.1060 kDa chaperonin OS=Thermosipho africanus (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258175 ID=DY258175; Name=DY258175; organism=Citrus clementina; type=EST; length=860bp
AGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTC
GAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGT
TGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTA
AGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAAATATTGTTAAA
AGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTGTTAA
TGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATG
GATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATT
ATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGT
GGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGC
CTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGA
TACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGAC
TTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTC
TTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGA
TAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTG
CAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCC
TTCACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCAC
TGTTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGGTACATGA
TTTTACACAT
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