DY258175

Overview
NameDY258175
Unique NameDY258175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1445..2304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_MAGSM (60 kDa chaperonin OS=Magnetococcus sp. (strain MC-1) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.342e-30
Identity = 75/166 (45.18%), Postives = 104/166 (62.65%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VG  TE E+KE+K RV+DAL+AT+AA            LLR + +         N +++VG NIV RAL  PL++IA NAG  GSVV  +V+ +    +G+NAATG YEDL+A+G+IDP KVVR  L+ A+SVA   + ++ +V E+ + EPAMP G+     G G
Sbjct:  381 VGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGVALLR-AREASLTNLQGANHDQQVGINIVTRALEEPLRIIASNAGAEGSVVVNRVVETKETNFGFNAATGVYEDLVASGVIDPAKVVRHALQAAASVAGLMITTEAMVAELPKDEPAMPGGDMGGMGGMG 545          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_BACV8 (60 kDa chaperonin OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.342e-30
Identity = 74/159 (46.54%), Postives = 100/159 (62.89%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 479
            VGA +E E+KEKK RV+DAL AT+AA             +R S  ++ +K   DN++E  G  I+KRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YE+L AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  381 VGAASEVEMKEKKDRVDDALCATRAAIEEGIVPGGGVAYIRASEALEGLKG--DNEDETTGIEIIKRAIEEPLRQIVANAGKEGAVVVQKVREGKGD-FGYNARTDVYENLHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_AZOPC (60 kDa chaperonin OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.342e-30
Identity = 75/164 (45.73%), Postives = 103/164 (62.80%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 494
            VGA +E E+KEKK RV+DAL+AT+AA             +R  S ++  K    N++E  G  IVKRA+  PL+ I +NAG  G+V++++V   +   +GYNA TG YEDL  AG+IDPTKV R  LE+A+S+A   L ++CV+ E+KE  PA PA  PM   G
Sbjct:  381 VGAPSEVEMKEKKDRVDDALSATRAAIEEGTVPGGGVAYVRAISILEGFKGI--NEDETTGIEIVKRAIEEPLRQIVENAGKEGAVIAQRV-KEEKDDFGYNARTGIYEDLYVAGVIDPTKVARVALENAASIAGMLLTTECVITEVKEENPA-PAMPPMGGGG 540          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.342e-30
Identity = 73/167 (43.71%), Postives = 101/167 (60.48%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 503
            VGA TETE+K++KLR+EDA+NATKAA           TL  L+ +++         EE  G+ IV RAL  PLK IA+NAG NG+V+ E+V   D    G+NAA   + D+  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+   PAG  M    + Y
Sbjct:  379 VGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPELETWANENLQSEELTGSLIVSRALLAPLKRIAENAGQNGAVIGERVKEKD-FNTGFNAANNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKENAPAGAGMGGGDFDY 544          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_PROM2 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9215) GN=groL1 PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.342e-30
Identity = 75/167 (44.91%), Postives = 104/167 (62.28%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAM---PAGNPMDNSG 494
            VGA TETE+K KKLR+ED+LNATKAA           TL+ +S  +  + +T  +D+ + G NI+K AL  P K IAKNAG NG VV  ++   +    G+NA +G YEDL  +GI+DPTKV+R  L+ + S+A   L ++  + +I EPEPA    P+G+PM   G
Sbjct:  379 VGAATETEMKYKKLRIEDSLNATKAAIEEGVVPGGGQTLIEISDDLLNLSQT-SSDDLRTGINIIKEALLEPTKQIAKNAGFNGDVVIAEIKRLNK---GFNANSGKYEDLKNSGILDPTKVIRLALQDSVSIAAMLLTTEVAIADIPEPEPAAPGGPSGDPMGGMG 541          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 494
            VGA +E E+KEKK RV+DAL+ATKAA            L+R ++KV   K  L  DE K+G  I+KRA+  PLK IA+NAG +  VV+  V  + N  +G+NAA G Y D+ A GIIDP KV R  L++A SV+   L ++  + EIKE +PAMP  + M   G
Sbjct:  381 VGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAAKV---KLELSGDE-KIGYEIIKRAISAPLKQIAQNAGFDAGVVANNVEQNGNENFGFNAANGEYVDMFAEGIIDPLKVARIALQNAVSVSSLLLTTEATISEIKEDKPAMPDMSGMGGMG 540          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_WOLRE (60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 79/166 (47.59%), Postives = 102/166 (61.45%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAGNPMDNSG 494
            VGA TETE+KEKK RV+DAL+ATKAA             ++  +KVD     L  DE  +GA+IV+RAL  PL+ IA+NAG +  VV+  V  S +  YG+NAATG Y D+  AGIIDP KV R  L++A SVA   L ++  + E+KE  P PAMP  + M   G
Sbjct:  380 VGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAAFIKAGAKVDL---NLSGDEA-IGADIVRRALTAPLRQIAENAGFDAGVVANSVSVSKDDNYGFNAATGEYVDMFKAGIIDPVKVERIALQNAVSVASLLLTTEATISELKEDKPMPAMPDMSGMGGMG 541          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_THET8 (60 kDa chaperonin OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=groL PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLS-SDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 470
            VGA TETELKEKK R EDALNAT+AA           TLLR  S V+ + + L+ DE   GA IV+RAL  P + IA+NAG  GSV+ +++L+ + N +YG+NAATG + D++ AGI+DP KV R  L++A+S+    L ++ VV E  E + + PA
Sbjct:  379 VGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEA-TGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPA 534          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_THET2 (60 kDa chaperonin OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=groL PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLS-SDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 470
            VGA TETELKEKK R EDALNAT+AA           TLLR  S V+ + + L+ DE   GA IV+RAL  P + IA+NAG  GSV+ +++L+ + N +YG+NAATG + D++ AGI+DP KV R  L++A+S+    L ++ VV E  E + + PA
Sbjct:  379 VGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEA-TGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPA 534          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_CLONN (60 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groL PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 78/164 (47.56%), Postives = 105/164 (64.02%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 494
            VGA TETELKE+KLR+EDAL ATKAA             LR   +V+  K T DN E ++G  I++RAL  P++ IA NAG+ GSV+ +K+ +S++   G++A  G Y ++M  GI+DP KV R  L++A+SVA TFL ++CVV EI E  P MPA   M   G
Sbjct:  379 VGAATETELKERKLRIEDALAATKAAVEEGIVAGGGTAYLRAIKEVE--KLTDDNAEVRLGIAIIRRALEEPVRQIAANAGLEGSVIIDKIKNSEDG-IGFDALEGEYTNMMQKGIVDPAKVTRSALQNAASVASTFLTTECVVAEIPEKNP-MPAAPGMGGMG 538          
The following BLAST results are available for this feature:
BLAST of DY258175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_MAGSM1.342e-3045.1860 kDa chaperonin OS=Magnetococcus sp. (strain MC-... [more]
CH60_BACV81.342e-3046.5460 kDa chaperonin OS=Bacteroides vulgatus (strain ... [more]
CH60_AZOPC1.342e-3045.7360 kDa chaperonin OS=Azobacteroides pseudotrichony... [more]
CH602_TRIEI1.342e-3043.7160 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH601_PROM21.342e-3044.9160 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_WOLSU1.753e-3046.3460 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH60_WOLRE1.753e-3047.5960 kDa chaperonin OS=Wolinella recta GN=groL PE=3 ... [more]
CH60_THET81.753e-3047.7760 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH60_THET21.753e-3047.7760 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH60_CLONN1.753e-3047.5660 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258175 ID=DY258175; Name=DY258175; organism=Citrus clementina; type=EST; length=860bp
AGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTC
GAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGT
TGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTA
AGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAAATATTGTTAAA
AGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTGTTAA
TGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATG
GATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATT
ATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGT
GGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGC
CTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGA
TACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGAC
TTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTC
TTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGA
TAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTG
CAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCC
TTCACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCAC
TGTTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGGTACATGA
TTTTACACAT
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