DY258175

Overview
NameDY258175
Unique NameDY258175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_SYNS9 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9902) GN=groL2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 78/166 (46.99%), Postives = 103/166 (62.05%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG--NPMDNSG 494
            VGA TETELK +KLR+EDALNAT+AA           TLL+L+  ++A+   LD D+ + G  IV+R+L  P+  IA NAG NG VV E +  S     G+NA TG YEDLMA GI+D TKVVR  ++ A S+A   + ++ V+ +  EPEP   AG  +PM   G
Sbjct:  379 VGAATETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLLQLAEDLNALAAQLDGDQ-RTGVEIVQRSLTAPVHQIATNAGHNGDVVIETMRQSGQ---GFNALTGVYEDLMATGIVDATKVVRLAVQDAVSIASLLVTTEVVIADKPEPEPPAGAGGEDPMGGMG 540          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_PROMA (60 kDa chaperonin 1 OS=Prochlorococcus marinus GN=groL1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 75/169 (44.38%), Postives = 106/169 (62.72%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-----GNPMDNSG 494
            VGA TETELK +KLR+EDALNAT+AA           TL++L  ++D++ ++LD D +  G +I+K+AL  P K IA NAG NG VV  ++        G+NAATG YEDL++AGIID  KV+R  L+ A S+A   + ++ ++ +  +PEP  PA     G+PM   G
Sbjct:  379 VGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLIKLGEELDSLSKSLDGD-QATGVDIIKKALSAPAKQIALNAGENGDVVVSEIQRLGK---GFNAATGQYEDLISAGIIDAVKVIRLALQDAVSIASLLITTEVIIAD--KPEPPSPAGGEGGGDPMGGMG 541          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_LEGPN (60 kDa chaperonin OS=Legionella pneumophila GN=groL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.290e-30
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VGA TE E+KEKK RVEDAL+AT+AA            L+R    +D++K   DND++ +G NI++RA+  P++ I  NAG   SVV  KV    ++ YG+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  + AG+     G G
Sbjct:  380 VGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKG--DNDDQNMGINILRRAIESPMRQIVTNAGYEASVVVNKVAEHKDN-YGFNAATGEYGDMVEMGILDPTKVTRMALQNAASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMG 542          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_LEGPL (60 kDa chaperonin OS=Legionella pneumophila (strain Lens) GN=groL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.290e-30
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VGA TE E+KEKK RVEDAL+AT+AA            L+R    +D++K   DND++ +G NI++RA+  P++ I  NAG   SVV  KV    ++ YG+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  + AG+     G G
Sbjct:  380 VGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKG--DNDDQNMGINILRRAIESPMRQIVTNAGYEASVVVNKVAEHKDN-YGFNAATGEYGDMVEMGILDPTKVTRMALQNAASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMG 542          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_LEGPH (60 kDa chaperonin OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=groL PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.290e-30
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VGA TE E+KEKK RVEDAL+AT+AA            L+R    +D++K   DND++ +G NI++RA+  P++ I  NAG   SVV  KV    ++ YG+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  + AG+     G G
Sbjct:  380 VGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKG--DNDDQNMGINILRRAIESPMRQIVTNAGYEASVVVNKVAEHKDN-YGFNAATGEYGDMVEMGILDPTKVTRMALQNAASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMG 542          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_LEGPC (60 kDa chaperonin OS=Legionella pneumophila (strain Corby) GN=groL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.290e-30
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VGA TE E+KEKK RVEDAL+AT+AA            L+R    +D++K   DND++ +G NI++RA+  P++ I  NAG   SVV  KV    ++ YG+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  + AG+     G G
Sbjct:  380 VGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKG--DNDDQNMGINILRRAIESPMRQIVTNAGYEASVVVNKVAEHKDN-YGFNAATGEYGDMVEMGILDPTKVTRMALQNAASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMG 542          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_LEGPA (60 kDa chaperonin OS=Legionella pneumophila (strain Paris) GN=groL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.290e-30
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VGA TE E+KEKK RVEDAL+AT+AA            L+R    +D++K   DND++ +G NI++RA+  P++ I  NAG   SVV  KV    ++ YG+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  + AG+     G G
Sbjct:  380 VGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKG--DNDDQNMGINILRRAIESPMRQIVTNAGYEASVVVNKVAEHKDN-YGFNAATGEYGDMVEMGILDPTKVTRMALQNAASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMG 542          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_DESVM (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.290e-30
Identity = 72/155 (46.45%), Postives = 100/155 (64.52%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 467
            VGA TETE+KEKK RVEDALNAT+AA             +R+S  +D +K    +D+E  G NI++RA+  PL+ I+ NAG  GS+V EKV    +  +G+NAA+G +EDL+ AG+IDP KV R  L++A+SVA   L ++C + E  E +  MP
Sbjct:  381 VGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTAYIRISRVLDDVKPA--DDDEAAGVNIIRRAIEEPLRQISSNAGYEGSIVVEKVRDGKDG-FGFNAASGEFEDLIKAGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEAKKDMP 532          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.290e-30
Identity = 73/157 (46.50%), Postives = 100/157 (63.69%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 473
            VGA TETELKE+KLR+EDALNAT+AA            L+ +   V+A+ E    DE K G  I++RAL  PL+ IA+NAG+ GSV+  KV+SSD    GY+     Y +++ AGI+DPTKV R  L++A+S++   L ++  VV+I   EP MP G
Sbjct:  379 VGAATETELKERKLRIEDALNATRAAVEEGIVAGGGTALVNVIPAVEALLEGSQGDE-KTGIQIIRRALEEPLRQIAENAGLEGSVIVNKVMSSDKG-IGYDVLNNKYVNMIEAGIVDPTKVTRSALQNAASISAMLLTTESAVVDIASEEPGMPGG 533          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.290e-30
Identity = 78/166 (46.99%), Postives = 103/166 (62.05%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VGA TE E+KEKK RVEDAL+AT+AA            LLR  + ++ +K   DN E++ G  IV RA+  PL+ I KNAG   SVV  KVL    + +GYNAA+G Y D++  G++DP KV R  L+HA+SVA   L +DC++ E+ E +PA  AG P D  G G
Sbjct:  381 VGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALLRARATLENLKT--DNAEQEAGVKIVLRAIEAPLRQIVKNAGDEPSVVVNKVLEGKGN-FGYNAASGEYGDMLEMGVLDPAKVTRSALQHAASVAGLMLTTDCMIAELPEDKPA--AGMP-DMGGMG 540          
The following BLAST results are available for this feature:
BLAST of DY258175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNS91.753e-3046.9960 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH601_PROMA1.753e-3044.3860 kDa chaperonin 1 OS=Prochlorococcus marinus GN=... [more]
CH60_LEGPN2.290e-3043.3760 kDa chaperonin OS=Legionella pneumophila GN=gro... [more]
CH60_LEGPL2.290e-3043.3760 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_LEGPH2.290e-3043.3760 kDa chaperonin OS=Legionella pneumophila subsp.... [more]
CH60_LEGPC2.290e-3043.3760 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_LEGPA2.290e-3043.3760 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_DESVM2.290e-3046.4560 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_ALKMQ2.290e-3046.5060 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH602_CHRVO2.290e-3046.9960 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258175 ID=DY258175; Name=DY258175; organism=Citrus clementina; type=EST; length=860bp
AGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTC
GAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGT
TGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTA
AGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAAATATTGTTAAA
AGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTGTTAA
TGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATG
GATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATT
ATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGT
GGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGC
CTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGA
TACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGAC
TTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTC
TTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGA
TAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTG
CAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCC
TTCACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCAC
TGTTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGGTACATGA
TTTTACACAT
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