DY258197

Overview
NameDY258197
Unique NameDY258197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length960
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258197_ssr111 microsatellite DY258197_ssr111:111..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:3..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 288.886 bits (738), Expect = 2.954e-77
Identity = 140/178 (78.65%), Postives = 166/178 (93.26%), Query Frame = 3
Query:  144 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS 677
            D EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+EIYRI+S+K ++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 182          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.954e-77
Identity = 140/178 (78.65%), Postives = 166/178 (93.26%), Query Frame = 3
Query:  144 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS 677
            D EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHAD+NIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIS 182          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 2.954e-77
Identity = 140/178 (78.65%), Postives = 166/178 (93.26%), Query Frame = 3
Query:  144 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS 677
            D EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+  LSFIETSAL++ NVE+AF+ IL+EIYRI+S+K ++
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 182          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.915e-76
Identity = 142/212 (66.98%), Postives = 175/212 (82.55%), Query Frame = 3
Query:  144 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNI--KEGQTIVVGGASEANTKKPCRSS 773
            D EYDYLFK+VLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFAT++L ++G+ IKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+ TTFE   RWLKELRDH D NIV+M+IGNK+DL+HL  V+TED +++AE+E L F+ETSALEA NVE AF  +L++IYRI+SK+++ +G+   +++   +GQTI V   S    +  C S+
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 2.501e-76
Identity = 139/203 (68.47%), Postives = 174/203 (85.71%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKK 758
            +YDYLFK+VLIGDSGVGKSNLLSRF+RNEF LESKSTIGVEFATR+++V+ + +KAQIWDTAGQERYRAITSAYYRGA+GAL+VYD+T+  TFENV RWLKELRDH D NIVIM++GNK DL+HLRAV+TEDA+++AERE   F+ETSALE++NVE AF  +L+EIY+++ +K+L  G+  P+ + +GQTI VG    +  KK
Sbjct:   10 DYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDD-PAALPKGQTINVGKDDVSAVKK 211          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 4.266e-76
Identity = 145/212 (68.40%), Postives = 174/212 (82.08%), Query Frame = 3
Query:  144 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN--IKEGQTIVVGGASEANTKKPCRSS 773
            D EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT+TL V+ + +KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFEN +RWLKELRDH D NIV+M+IGNK+DL+HL AV TED +S+AERE L F+ETSALEA NVE AF  +L++IYRI+SK+++ +G+   S+    +GQTI V   S    +  C S+
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCST 218          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.160e-75
Identity = 142/212 (66.98%), Postives = 175/212 (82.55%), Query Frame = 3
Query:  144 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNI--KEGQTIVVGGASEANTKKPCRSS 773
            D EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT++L ++ + IKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  T+ENV+RWLKELRDH D NIV+M+IGNK+DL+HL AV+T++A+  AEREGL F+ETSALEA NVE AF   L++IYRI+SKK++ +G+   ++    +G+TI +     +  K  C SS
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.051e-74
Identity = 140/204 (68.63%), Postives = 173/204 (84.80%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTI-VVGGASEANTKK 758
            EYDYLFK VLIGDSGVGKSNLL RFTRNEF +ESKSTIGVEFATR + ++ + IKAQIWDTAGQERYRAITSAYYRGA+GAL+VYD+TK ++F+NV RWLKELR+HADSNIVIM++GNKTDL HLRAV+TE+AQ++A    LSFIETSA++A NVE+AFQT+L+EI+RI+S +SL +G+    +   GQT+ +    ++ N KK
Sbjct:    6 EYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDG-VHPTAGQTLNIAPTMNDLNKKK 208          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.051e-74
Identity = 141/210 (67.14%), Postives = 171/210 (81.43%), Query Frame = 3
Query:  144 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCRSS 773
            D EYDYLFKVVLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFATR+L V+ + IKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+ +TFENV  WLKELR+H D NIV+M++GNK+DL+HL AV TEDA+S+AE+E L F+ETSALEA NVE AF  +L++I+ I+SKK++ +   + +   +G  I +G    A  K  C S+
Sbjct:    7 DDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIGKDVSAVKKGGCCSN 216          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.588e-73
Identity = 135/195 (69.23%), Postives = 166/195 (85.13%), Query Frame = 3
Query:  144 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVV 728
            D EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFAT+T +VEG+ +KAQIWDTAGQERYRAITSAYYRGA+GALL+YDVT+  TFEN +RWL+ELR H D NIV+M+IGNK DL+HL AV TE+A+++AERE L F+ETSAL+A NVE AF  +L++I++I+SK+S+  G  +     +G+TI V
Sbjct:    7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINV 201          
The following BLAST results are available for this feature:
BLAST of DY258197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_HUMAN2.954e-7778.65Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_DISOM2.954e-7778.65Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_BOVIN2.954e-7778.65Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11E_LOTJA1.915e-7666.98Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11B_TOBAC2.501e-7668.47Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RB11D_LOTJA4.266e-7668.40Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
YPT3_NICPL6.160e-7566.98Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
YPT3_SCHPO1.051e-7468.63GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA1C_ARATH1.051e-7467.14Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAA1A_ARATH2.588e-7369.23Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CB10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258197 ID=DY258197; Name=DY258197; organism=Citrus clementina; type=EST; length=960bp
GGAGCAACAGAGAAATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATT
CATCTTCACTTCTTCAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTG
TTATCTAAAGATATATATATAATTATAAATGGCGAGGTGACCGGACGTGG
AATACGATTACTTGTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGC
AAGTCGAATTTACTCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTC
CAAATCCACTATTGGCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAG
GAAGGACAATAAAAGCTCAGATATGGGACACTGCAGGTCAGGAGCGATAC
AGAGCAATAACCAGTGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGT
TTATGACGTGACGAAACCAACAACATTTGAAAATGTGAGCCGATGGCTGA
AGGAACTGAGGGACCACGCAGACTCCAACATTGTGATCATGATGATTGGC
AATAAGACTGATCTGAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCA
AAGCTATGCTGAGAGAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTG
AAGCAATAAATGTCGAGAAGGCTTTCCAGACAATTCTCTCAGAGATATAC
CGGATAATCAGCAAGAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAA
CATCAAAGAAGGACAGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACA
CAAAGAAACCTTGTCGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGT
TTATCTCAATTTCTTCCCATTTTGTCGTGTCGGGCTTCCAAGTTAAATCT
TTCATTCTCTCAATGGTTTATTGGTTAAGCTTCTATTATTTGTTGTTAAC
AATGTCAAATTTGAATTATTCTCCTCATTTTGTTGTTGTGATATCAGAAT
TACTTTTTGT
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