DY258197

Overview
NameDY258197
Unique NameDY258197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length960
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258197_ssr111 microsatellite DY258197_ssr111:111..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:3..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAS1_DROAN (Ras-like protein 1 OS=Drosophila ananassae GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.822e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 3
Query:  165 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 647
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.822e-18
Identity = 55/168 (32.74%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  165 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 665
            +K+V++G  GVGKS L  +  ++ F  E   TI   +  +   ++ + +   + DTAGQE Y A+   Y R   G LLVY +    +F+ ++ +  ++    DS N+ ++++GNK DL+  R V+ ED  + A      F+ETSA + INVE+AF  ++  I +  +K
Sbjct:    5 YKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KQCTIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQVSYEDGLALANSFNCPFLETSAKQRINVEEAFYGLVRNINQYNAK 171          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAPC_DICDI (Ras-related protein rapC OS=Dictyostelium discoideum GN=rapC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.822e-18
Identity = 64/229 (27.95%), Postives = 111/229 (48.47%), Query Frame = 3
Query:  165 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT---FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKE---------------------GQTIVVGGASEANTKKPCRSSS 776
            +KVV++G SG GK++L  RF   +F      TI   +       +G  I  +I DT+G ERY A+   Y R A   +LVY +T   +    EN+  ++ +++D   S I ++++GNK DL+  R V  E+ ++  ++ G+  F+ETSA   +N++ A+  +     +++SK+S  +G     + K+                       ++ V G S  +    C SSS
Sbjct:    4 YKVVVLGASGTGKTSLTVRFVNGDFVETYDPTIEDLYRKVIETNKGEHIMLEIMDTSGTERYLAMRDLYIRNAQAFVLVYSITSRVSLLELENIKNYICQVKDRPISQIPMVVLGNKCDLEDTRVVFPEEVEALTKKWGIEDFLETSAKIDMNIQSAYDCL---TLQLMSKQSFLNGSSNGKDKKDKKEKKTHKKDSGSNNSSINSSSSSLSVSGGSNLSISSSCSSSS 229          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.822e-18
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  165 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 626
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            I+  +WDTAGQE++  +   YY     A++++DVT   T++NV  W ++L      NI I++ GNK D+K  +  A     ++  ++ L + + SA    N EK F
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLA-RVCENIPIVLCGNKVDVKDRKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.379e-18
Identity = 59/178 (33.15%), Postives = 95/178 (53.37%), Query Frame = 3
Query:  165 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 695
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T      DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI +   +K     E  P
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGP 179          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.379e-18
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  165 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 626
            FK++L+GD G GK+  + R    EF    + TIGVE            ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W K++    D NI I++ GNK D+K+ +  A     ++  ++ L + E SA    N EK F
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCD-NIPIVLCGNKVDMKNRQVKA--KMVTFHRKKNLQYYEISAKSNYNFEKPF 168          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.379e-18
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  165 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 626
            FK++L+GD G GK+  + R    EF    + TIGVE            ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W K++    D NI I++ GNK D+K+ +  A     ++  ++ L + E SA    N EK F
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCD-NIPIVLCGNKVDMKNRQVKA--KMVTFHRKKNLQYYEISAKSNYNFEKPF 168          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.107e-18
Identity = 53/164 (32.32%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  165 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 653
            +K+V++GD GVGKS L  +  ++ F  E   TI   +  +  +++G      + DTAGQE Y A+   Y R   G LLVY++T  ++F+ +S + ++ LR        ++++ NK DL+  R V+  + +  A+     ++ETSA   +NVE+AF +++  I R
Sbjct:    9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRR 171          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RASN_DANRE (GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.107e-18
Identity = 62/175 (35.43%), Postives = 95/175 (54.29%), Query Frame = 3
Query:  165 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 686
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +F +V  + ++++   DS ++ ++++GN  DL   R V T+ AQ  A   G+ F+ETSA     VE AF T++ EI R    K L+S E
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADVHLYREQIKRVKDSDDVPMVLVGNICDL--ARTVDTKQAQELARSYGIEFVETSAKTRQGVEDAFYTLVREI-RHYRMKKLNSRE 174          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.107e-18
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 3
Query:  165 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIK 707
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++++GNK  L   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI +   K S    +   S  K
Sbjct:    4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCALPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKSKTK 183          
The following BLAST results are available for this feature:
BLAST of DY258197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_DROAN1.822e-1834.57Ras-like protein 1 OS=Drosophila ananassae GN=Ras8... [more]
RAS1_CANAL1.822e-1832.74Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]
RAPC_DICDI1.822e-1827.95Ras-related protein rapC OS=Dictyostelium discoide... [more]
RAN_CAEEL1.822e-1833.12GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RASH_MOUSE2.379e-1833.15GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]
RAN3_ORYSJ2.379e-1833.77GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI2.379e-1833.77GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAS_SCHPO3.107e-1832.32Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RASN_DANRE3.107e-1835.43GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1[more]
RASK_XENLA3.107e-1833.52GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CB10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258197 ID=DY258197; Name=DY258197; organism=Citrus clementina; type=EST; length=960bp
GGAGCAACAGAGAAATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATT
CATCTTCACTTCTTCAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTG
TTATCTAAAGATATATATATAATTATAAATGGCGAGGTGACCGGACGTGG
AATACGATTACTTGTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGC
AAGTCGAATTTACTCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTC
CAAATCCACTATTGGCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAG
GAAGGACAATAAAAGCTCAGATATGGGACACTGCAGGTCAGGAGCGATAC
AGAGCAATAACCAGTGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGT
TTATGACGTGACGAAACCAACAACATTTGAAAATGTGAGCCGATGGCTGA
AGGAACTGAGGGACCACGCAGACTCCAACATTGTGATCATGATGATTGGC
AATAAGACTGATCTGAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCA
AAGCTATGCTGAGAGAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTG
AAGCAATAAATGTCGAGAAGGCTTTCCAGACAATTCTCTCAGAGATATAC
CGGATAATCAGCAAGAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAA
CATCAAAGAAGGACAGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACA
CAAAGAAACCTTGTCGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGT
TTATCTCAATTTCTTCCCATTTTGTCGTGTCGGGCTTCCAAGTTAAATCT
TTCATTCTCTCAATGGTTTATTGGTTAAGCTTCTATTATTTGTTGTTAAC
AATGTCAAATTTGAATTATTCTCCTCATTTTGTTGTTGTGATATCAGAAT
TACTTTTTGT
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