DY258197

Overview
NameDY258197
Unique NameDY258197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length960
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258197_ssr111 microsatellite DY258197_ssr111:111..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:3..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.600e-46
Identity = 97/201 (48.26%), Postives = 131/201 (65.17%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 755
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +        A + IK G       A+ A  +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA-NGIKIGPQHAATNATHAGNQ 202          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.600e-46
Identity = 97/201 (48.26%), Postives = 131/201 (65.17%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 755
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +        A + IK G       A+ A  +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA-NGIKIGPQHAATNATHAGNQ 202          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.008e-46
Identity = 90/192 (46.88%), Postives = 133/192 (69.27%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAPSNIKEGQT 719
            YDYLFK++LIGDSGVGK+ LL RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+ETSA  + NVE+AF T+  +I   +++K   S S+G   P  I E ++
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRS 196          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 6.008e-46
Identity = 90/192 (46.88%), Postives = 133/192 (69.27%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAPSNIKEGQT 719
            YDYLFK++LIGDSGVGK+ LL RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+ETSA  + NVE+AF T+  +I   +++K   S S+G   P  I E ++
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRS 196          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.008e-46
Identity = 90/192 (46.88%), Postives = 133/192 (69.27%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAPSNIKEGQT 719
            YDYLFK++LIGDSGVGK+ LL RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+E SA  ++NVE+AF T+  +I   +++K   S SSG   P  I E ++
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITENRS 196          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.008e-46
Identity = 91/171 (53.22%), Postives = 122/171 (71.35%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 665
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.008e-46
Identity = 91/171 (53.22%), Postives = 122/171 (71.35%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 665
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.008e-46
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 686
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.008e-46
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 686
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.008e-46
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 686
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
The following BLAST results are available for this feature:
BLAST of DY258197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_HUMAN4.600e-4648.26Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CANFA4.600e-4648.26Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB8B_PONAB6.008e-4646.88Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_HUMAN6.008e-4646.88Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8B_BOVIN6.008e-4646.88Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB2A_RABIT6.008e-4653.22Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_CHICK6.008e-4653.22Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB1B_PONAB6.008e-4650.84Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN6.008e-4650.84Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN6.008e-4650.84Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CB10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258197 ID=DY258197; Name=DY258197; organism=Citrus clementina; type=EST; length=960bp
GGAGCAACAGAGAAATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATT
CATCTTCACTTCTTCAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTG
TTATCTAAAGATATATATATAATTATAAATGGCGAGGTGACCGGACGTGG
AATACGATTACTTGTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGC
AAGTCGAATTTACTCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTC
CAAATCCACTATTGGCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAG
GAAGGACAATAAAAGCTCAGATATGGGACACTGCAGGTCAGGAGCGATAC
AGAGCAATAACCAGTGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGT
TTATGACGTGACGAAACCAACAACATTTGAAAATGTGAGCCGATGGCTGA
AGGAACTGAGGGACCACGCAGACTCCAACATTGTGATCATGATGATTGGC
AATAAGACTGATCTGAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCA
AAGCTATGCTGAGAGAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTG
AAGCAATAAATGTCGAGAAGGCTTTCCAGACAATTCTCTCAGAGATATAC
CGGATAATCAGCAAGAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAA
CATCAAAGAAGGACAGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACA
CAAAGAAACCTTGTCGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGT
TTATCTCAATTTCTTCCCATTTTGTCGTGTCGGGCTTCCAAGTTAAATCT
TTCATTCTCTCAATGGTTTATTGGTTAAGCTTCTATTATTTGTTGTTAAC
AATGTCAAATTTGAATTATTCTCCTCATTTTGTTGTTGTGATATCAGAAT
TACTTTTTGT
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