DY258197

Overview
NameDY258197
Unique NameDY258197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length960
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258197_ssr111 microsatellite DY258197_ssr111:111..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:3..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.847e-46
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 686
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.847e-46
Identity = 91/179 (50.84%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 686
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.025e-45
Identity = 96/189 (50.79%), Postives = 132/189 (69.84%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA----PSNI 704
            E+DYLFK++LIGDS VGKS  L RF  + +     STIGV+F  RT++VEG+T+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV +WL E+  +A+ ++  +++GNK DL   RAV T  AQ+YA+  G+ F+ETSA E+INVE+AF  + + I     KKS +  + A    PSN+
Sbjct:    4 EFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAI-----KKSKAGSQAALERKPSNV 187          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.025e-45
Identity = 92/192 (47.92%), Postives = 135/192 (70.31%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIK-EGQTI 722
            EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  RT++ +G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYD T+  +F NV +WL E+  +A+ ++  ++IGNK D+   + V+TE  ++ A+  G+ F+ETSA ++INVE+AF TI  EI + +  ++ ++    P  ++ +GQ I
Sbjct:    4 EYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPI 195          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.025e-45
Identity = 90/179 (50.28%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 686
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R +TS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.338e-45
Identity = 90/171 (52.63%), Postives = 122/171 (71.35%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 665
            Y YLFK ++IGD+GVGKS LL +FT   F      T+GVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.338e-45
Identity = 96/196 (48.98%), Postives = 133/196 (67.86%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG-EPAPSNIKEGQTIVVGG 734
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S G E +  NI+       GG
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGG 199          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.748e-45
Identity = 94/194 (48.45%), Postives = 128/194 (65.98%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGG 734
            Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR ++V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+  + N VI++IGNK DL+  R V  E+A+ +AE  GL F+E SA    NVE AF     +IY+ I   SL     A S ++   +   GG
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL-NAAESGVQHKPSAPQGG 200          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.748e-45
Identity = 94/194 (48.45%), Postives = 128/194 (65.98%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGG 734
            Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR ++V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+  + N VI++IGNK DL+  R V  E+A+ +AE  GL F+E SA    NVE AF     +IY+ I   SL     A S ++   +   GG
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL-NAAESGVQHKPSAPQGG 200          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.748e-45
Identity = 94/194 (48.45%), Postives = 128/194 (65.98%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGG 734
            Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR ++V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+  + N VI++IGNK DL+  R V  E+A+ +AE  GL F+E SA    NVE AF     +IY+ I   SL     A S ++   +   GG
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL-NAAESGVQHKPSAPQGG 200          
The following BLAST results are available for this feature:
BLAST of DY258197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_MOUSE7.847e-4650.84Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_MACFA7.847e-4650.84Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
YPTM1_MAIZE1.025e-4550.79GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RABD1_ARATH1.025e-4547.92Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1B_RAT1.025e-4550.28Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB2A_RAT1.338e-4552.63Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB1_DISOM1.338e-4548.98Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB14_RAT1.748e-4548.45Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB1.748e-4548.45Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG1.748e-4548.45Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CB10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258197 ID=DY258197; Name=DY258197; organism=Citrus clementina; type=EST; length=960bp
GGAGCAACAGAGAAATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATT
CATCTTCACTTCTTCAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTG
TTATCTAAAGATATATATATAATTATAAATGGCGAGGTGACCGGACGTGG
AATACGATTACTTGTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGC
AAGTCGAATTTACTCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTC
CAAATCCACTATTGGCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAG
GAAGGACAATAAAAGCTCAGATATGGGACACTGCAGGTCAGGAGCGATAC
AGAGCAATAACCAGTGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGT
TTATGACGTGACGAAACCAACAACATTTGAAAATGTGAGCCGATGGCTGA
AGGAACTGAGGGACCACGCAGACTCCAACATTGTGATCATGATGATTGGC
AATAAGACTGATCTGAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCA
AAGCTATGCTGAGAGAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTG
AAGCAATAAATGTCGAGAAGGCTTTCCAGACAATTCTCTCAGAGATATAC
CGGATAATCAGCAAGAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAA
CATCAAAGAAGGACAGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACA
CAAAGAAACCTTGTCGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGT
TTATCTCAATTTCTTCCCATTTTGTCGTGTCGGGCTTCCAAGTTAAATCT
TTCATTCTCTCAATGGTTTATTGGTTAAGCTTCTATTATTTGTTGTTAAC
AATGTCAAATTTGAATTATTCTCCTCATTTTGTTGTTGTGATATCAGAAT
TACTTTTTGT
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