DY258197

Overview
NameDY258197
Unique NameDY258197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length960
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258197_ssr111 microsatellite DY258197_ssr111:111..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:3..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.086e-45
Identity = 94/192 (48.96%), Postives = 132/192 (68.75%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIV 725
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+ IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK+DL   + V    A+++A+  G+ F+ETSA  A NVE+AF T+ +EI      K+  + +P P+  K G  +V
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI------KNRMASQPIPT--KAGGPVV 187          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.086e-45
Identity = 85/172 (49.42%), Postives = 124/172 (72.09%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 668
            YDYLFK++LIGDSGVGK+ LL RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G + VYD+T   +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+ETSA  +INVE+AF T+  +I   ++KK
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKK 176          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.086e-45
Identity = 93/204 (45.59%), Postives = 134/204 (65.69%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPC 764
            YDYL K++LIGDSGVGKS LL RF+ + F     +TIG++F  RT+++EG+ IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W++ +  HA  ++  M+IGNK D+   + V +   +S A+  G+ F+ETSA  +INVE+AF ++  +    I K+ + +    P  ++ G  +   GA+  N KK C
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKD----IKKRMIDTPNEQPQVVQPGTNL---GANN-NKKKAC 207          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.086e-45
Identity = 88/171 (51.46%), Postives = 120/171 (70.18%), Query Frame = 3
Query:  147 VEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 659
            + Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++ + IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R HA++N+ IM++GNK DL H RAV+ E+ + +A+  GL F+E SA  A NVE+AF      IY+ I
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.643e-45
Identity = 91/182 (50.00%), Postives = 128/182 (70.33%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 695
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+ IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK+DL   + V  + A+++A+  G+ F+ETSA  A NVE+AF T+ +EI      K+  + +P P
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI------KNRMASQPVP 179          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.643e-45
Identity = 88/171 (51.46%), Postives = 120/171 (70.18%), Query Frame = 3
Query:  147 VEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 659
            + Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++ + IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R HA++N+ IM++GNK DL H RAV+ E+ + +A+  GL F+E SA  A NVE+AF      IY+ I
Sbjct:    1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 6.643e-45
Identity = 88/171 (51.46%), Postives = 123/171 (71.93%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 665
            Y +LFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++ + IK QIWDTAGQE +R+IT +YYRG+ GALLVYD+T+  TF +++ WLK+ R +A+SN+ I++IGNK+D++  RAV+ E+ + +A+  GL F+ETSA  A NVE+AF    S+IY  I K
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQK 172          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 6.643e-45
Identity = 94/205 (45.85%), Postives = 132/205 (64.39%), Query Frame = 3
Query:  150 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPC 764
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT+ ++G+ IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +W++E++ +A  ++  +++GNK DL   + V T  A+ YA+  G+ F+ETSA  + NVE+AF  + SEI     KK     +P  ++      +   G +    KK C
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEI-----KKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKC 203          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.480e-44
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 701
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of DY258197 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.933e-44
Identity = 87/171 (50.88%), Postives = 122/171 (71.35%), Query Frame = 3
Query:  153 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 665
            Y+Y+FK ++IGD GVGKS LL +FT N+F  +S  TIGVEF TR + V  + IK QIWDTAGQER+RA+T +YYRGA GALLVYD+T+  T+ +++ WL + R+  + N VIM+IGNK DL+  R V  E+A ++A++ GL F+E+SA    NVE+AF      I++ + +
Sbjct:    5 YEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQE 175          
The following BLAST results are available for this feature:
BLAST of DY258197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTC1_CHLRE5.086e-4548.96GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB8_DISOM5.086e-4549.42Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8A_DICDI5.086e-4545.59Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB2A_MAIZE5.086e-4551.46Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
YPTV1_VOLCA6.643e-4550.00GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB2B_MAIZE6.643e-4551.46Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB2A_DICDI6.643e-4551.46Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB1B_DICDI6.643e-4545.85Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB8A_BOVIN1.480e-4448.09Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB14_DICDI1.933e-4450.88Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CB10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258197 ID=DY258197; Name=DY258197; organism=Citrus clementina; type=EST; length=960bp
GGAGCAACAGAGAAATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATT
CATCTTCACTTCTTCAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTG
TTATCTAAAGATATATATATAATTATAAATGGCGAGGTGACCGGACGTGG
AATACGATTACTTGTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGC
AAGTCGAATTTACTCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTC
CAAATCCACTATTGGCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAG
GAAGGACAATAAAAGCTCAGATATGGGACACTGCAGGTCAGGAGCGATAC
AGAGCAATAACCAGTGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGT
TTATGACGTGACGAAACCAACAACATTTGAAAATGTGAGCCGATGGCTGA
AGGAACTGAGGGACCACGCAGACTCCAACATTGTGATCATGATGATTGGC
AATAAGACTGATCTGAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCA
AAGCTATGCTGAGAGAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTG
AAGCAATAAATGTCGAGAAGGCTTTCCAGACAATTCTCTCAGAGATATAC
CGGATAATCAGCAAGAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAA
CATCAAAGAAGGACAGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACA
CAAAGAAACCTTGTCGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGT
TTATCTCAATTTCTTCCCATTTTGTCGTGTCGGGCTTCCAAGTTAAATCT
TTCATTCTCTCAATGGTTTATTGGTTAAGCTTCTATTATTTGTTGTTAAC
AATGTCAAATTTGAATTATTCTCCTCATTTTGTTGTTGTGATATCAGAAT
TACTTTTTGT
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