DY258200

Overview
NameDY258200
Unique NameDY258200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15384 contig Ccv1_Contig15384:319..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_THETN (Ribose-phosphate pyrophosphokinase OS=Thermoanaerobacter tengcongensis GN=prs PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.286e-28
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VDH+   P++  Y   K +  +D+VVVSPD G V RAR FA+KL+ APLAI+DKRR   NVAEVMN+IGDVKGK A++VDD+IDTAGT+ + A  L   GA E+YAC TH V
Sbjct:  146 VDHLLGGPILAKYFMDKELG-DDVVVVSPDHGSVTRARYFAEKLN-APLAIIDKRRPKANVAEVMNIIGDVKGKKAILVDDLIDTAGTLVQAAEALLDHGAVEIYACATHGV 255          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_ENTFA (Ribose-phosphate pyrophosphokinase 1 OS=Enterococcus faecalis GN=prs1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.017e-28
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VDH+   P+I DY     +  +D+VVVSPD GGV RAR  A+ L  AP+AI+DKRR   NVAEVMN+IG V+GK  V++DDMIDTAGTI+  A  L + GA++VYA CTH V
Sbjct:  148 VDHLMGAPLIADYFIEHGIQGDDVVVVSPDHGGVTRARKLAEFLK-APIAIIDKRRPKANVAEVMNIIGHVEGKTCVLIDDMIDTAGTISLAANALKEAGAKDVYASCTHPV 258          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_LACLA (Ribose-phosphate pyrophosphokinase 1 OS=Lactococcus lactis subsp. lactis GN=prs1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.009e-27
Identity = 66/113 (58.41%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSS-NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VDH+   P+I +Y   + VS+ +D+VVVSPD GGV RAR  A  L  APL+I+DKRR   NVAE+MN+IGDV+GK  +++DDMIDTAGTI   A  L + GA EVYA CTHAV
Sbjct:  144 VDHLMGSPLIAEYFRRQLVSAGDDIVVVSPDHGGVGRARKLANFLK-APLSIIDKRRPRANVAEIMNIIGDVQGKKCILIDDMIDTAGTITLAANALKELGATEVYASCTHAV 255          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_BACSU (Ribose-phosphate pyrophosphokinase OS=Bacillus subtilis GN=prs PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.623e-27
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+   P++ +Y   K +   D+V+VSPD GGV RAR  A +L  AP+AI+DKRR   NVAEVMN++G+++GK A+++DD+IDTAGTI   A  L + GA+EVYACCTH V
Sbjct:  148 IDHLMGVPILGEYFEGKNLE--DIVIVSPDHGGVTRARKLADRLK-APIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPV 256          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_BACCR (Ribose-phosphate pyrophosphokinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=prs PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.623e-27
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+   P++ DY  +K +   D+V+VSPD GGV RAR  A +L  AP+AI+DKRR   NV+EVMN+IG+++GK A+++DD+IDTAGTI   A  L + GA EVYACCTH V
Sbjct:  148 IDHLMGVPILSDYFETKGLK--DIVIVSPDHGGVTRARKMADRLK-APIAIIDKRRPRPNVSEVMNIIGNIEGKTAILIDDIIDTAGTITLAANALVENGASEVYACCTHPV 256          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_BACAN (Ribose-phosphate pyrophosphokinase OS=Bacillus anthracis GN=prs PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.623e-27
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+   P++ DY  +K +   D+V+VSPD GGV RAR  A +L  AP+AI+DKRR   NV+EVMN+IG+++GK A+++DD+IDTAGTI   A  L + GA EVYACCTH V
Sbjct:  148 IDHLMGVPILSDYFETKGLK--DIVIVSPDHGGVTRARKMADRLK-APIAIIDKRRPRPNVSEVMNIIGNIEGKTAILIDDIIDTAGTITLAANALVENGASEVYACCTHPV 256          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_VIBCH (Ribose-phosphate pyrophosphokinase OS=Vibrio cholerae GN=prs PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.426e-27
Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+++  PV+L+ + ++ +   D VVVSPD+GGV RARA AK L D  +AIVDKRR   NV+EVMNLIGDV+G+  V+VDDMIDT GT+ K A  L + GA+ V+A  THAVF
Sbjct:  143 VDNIFGTPVLLEDMKARNLE--DPVVVSPDLGGVVRARATAKALGDIDIAIVDKRRPRANVSEVMNLIGDVEGRDCVIVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVF 253          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_LACPL (Ribose-phosphate pyrophosphokinase 1 OS=Lactobacillus plantarum GN=prs1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.426e-27
Identity = 67/112 (59.82%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+   P++ DY  +  +  N  VVVSPD GGV RAR  A+ L  AP+AI+DKRR   NVAEVMN+IGDVKGK A+M+DDMIDTAGTI  GA  L   GA EVYA CTH V
Sbjct:  148 LDHLMGAPLLADYFLNHHLDEN-AVVVSPDHGGVTRARKLAEFLK-APIAIIDKRRPRANVAEVMNIIGDVKGKRAIMIDDMIDTAGTITLGAQALVDAGATEVYASCTHPV 257          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_XANAC (Ribose-phosphate pyrophosphokinase OS=Xanthomonas axonopodis pv. citri GN=prs PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 4.475e-27
Identity = 64/112 (57.14%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD+VY  P++L  +  +   +++L+VVSPDVGGV RARA AK+L DA LAI+DKRR   NVA VMN+IGDV+GK  V+VDD++DTAGT+   AA L Q GA +V A  TH V
Sbjct:  146 VDNVYASPLLLADIW-RAYGTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPV 256          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_CORAM (Ribose-phosphate pyrophosphokinase OS=Corynebacterium ammoniagenes GN=prs PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.475e-27
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+   P++ DY  +K +   D+V+VSPD GGV RAR  A +L  AP+AI+DKRR   NV+EVMN+IG+++GK A+++DD+IDTAGTI   A  L + GA EVYACCTH V
Sbjct:  148 IDHLMGVPILSDYFETKGLK--DIVIVSPDHGGVTRARKMADRLK-APIAIIDKRRPRPNVSEVMNIIGNIEGKTALLIDDIIDTAGTITLAANALVENGASEVYACCTHPV 256          
The following BLAST results are available for this feature:
BLAST of DY258200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
KPRS_THETN5.286e-2858.93Ribose-phosphate pyrophosphokinase OS=Thermoanaero... [more]
KPRS1_ENTFA9.017e-2857.14Ribose-phosphate pyrophosphokinase 1 OS=Enterococc... [more]
KPRS1_LACLA2.009e-2758.41Ribose-phosphate pyrophosphokinase 1 OS=Lactococcu... [more]
KPRS_BACSU2.623e-2753.57Ribose-phosphate pyrophosphokinase OS=Bacillus sub... [more]
KPRS_BACCR2.623e-2754.46Ribose-phosphate pyrophosphokinase OS=Bacillus cer... [more]
KPRS_BACAN2.623e-2754.46Ribose-phosphate pyrophosphokinase OS=Bacillus ant... [more]
KPRS_VIBCH3.426e-2756.64Ribose-phosphate pyrophosphokinase OS=Vibrio chole... [more]
KPRS1_LACPL3.426e-2759.82Ribose-phosphate pyrophosphokinase 1 OS=Lactobacil... [more]
KPRS_XANAC4.475e-2757.14Ribose-phosphate pyrophosphokinase OS=Xanthomonas ... [more]
KPRS_CORAM4.475e-2754.46Ribose-phosphate pyrophosphokinase OS=Corynebacter... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258200 ID=DY258200; Name=DY258200; organism=Citrus clementina; type=EST; length=919bp
GTGGACCATGTATACTGTCAGCCTGTGATTCTTGATTACCTTGCTAGCAA
GACGGTTTCTTCTAATGATTTGGTGGTGGTTTCACCTGATGTCGGTGGAG
TGGCAAGAGCACGTGCTTTTGCCAAAAAGTTATCTGATGCTCCTTTAGCC
ATAGTAGATAAAAGGCGTCATGGACACAATGTTGCAGAGGTGATGAACCT
TATTGGCGATGTAAAAGGAAAAGTTGCAGTAATGGTGGATGACATGATTG
ACACTGCTGGGACTATTGCAAAAGGTGCAGCTCTTTTACATCAAGAAGGG
GCCAGGGAAGTTTATGCATGCTGCACGCATGCAGTTTTCAGGTTGGATTA
CAAATCATAAATTTATCAACTTGATCTCTTTTGACCCATTAACATTCCGA
CAAATAGATTAGATCGCAATTCTGATTCTTTTGCCATCACCTTCTGATAC
TTCCTTGGTCGAGCATCTATTCAACACCTGATGATGAGGAGAGGGTGACA
GCCCCTAACTAGAGGAAGAACCTCGGGGTATCAAGCCAGATGAAAGCTCC
CTCCTGCAATAGAGAGGTTGTCAGGTGGCCTGTTTCAAGAGGTGATCGTT
ACAAATACAATCCCAGTGGCAGAGAAGAACTACTTCCCTGAGTTGACTGT
TCTTTCTATAGCCAACCTGTTGGGTGAGACTATATGGCGTGTTCACGATG
ATTGTTCCGTAAGTAGCATTTTTCAATGAAGTCAGGGAGATATCGAGTGA
TGGTAGCTGCTTCAACTGGTAAAAGGCGTAGAATCGAGTAGGTCTCATAT
CTTTAGGTAGTCTAGCATAAGGGGAAAATTAATCTTATATGCTTTCTCAT
TTGTTAATTTTAATTTTCACTACATTTTTATTGGGCATTAAAGTTTCATC
ATGAATGATGATTCCCATT
back to top