DY258200

Overview
NameDY258200
Unique NameDY258200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15384 contig Ccv1_Contig15384:319..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_CLOTE (Ribose-phosphate pyrophosphokinase OS=Clostridium tetani GN=prs PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.475e-27
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSN-DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+   P++  Y A        D+VVVSPD+G V RAR FA ++  AP+AI+DKRR   NV+EVM++IGD+K K  +++DDMIDTAGTI  GA  L + GA++VYACCTHAV
Sbjct:  148 LDHLLGVPILGKYFAENGFDQREDVVVVSPDLGSVTRARKFADRIH-APIAIIDKRRPKPNVSEVMHIIGDIKDKTCILIDDMIDTAGTITNGANALVERGAKDVYACCTHAV 259          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_XANCP (Ribose-phosphate pyrophosphokinase OS=Xanthomonas campestris pv. campestris GN=prs PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.844e-27
Identity = 63/112 (56.25%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +D+VY  P++L  +  +   +++L+VVSPDVGGV RARA AK+L DA LAI+DKRR   NVA VMN+IGDV+GK  V+VDD++DTAGT+   AA L Q GA +V A  TH V
Sbjct:  146 IDNVYASPLLLADIW-RAYGTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPV 256          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_VIBVY (Ribose-phosphate pyrophosphokinase OS=Vibrio vulnificus (strain YJ016) GN=prs PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+++  PV+L+ + ++ +   D VVVSPD+GGV RARA AK L D  +AIVDKRR   NV+EVMNLIGDV+G+  V+VDDMIDT GT+ K A  L + GA+ V+A  THAVF
Sbjct:  143 VDNIFGTPVLLEDMHARGLE--DPVVVSPDLGGVVRARATAKALGDIDIAIVDKRRPRANVSEVMNLIGDVEGRDCVIVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVF 253          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_VIBVU (Ribose-phosphate pyrophosphokinase OS=Vibrio vulnificus GN=prs PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+++  PV+L+ + ++ +   D VVVSPD+GGV RARA AK L D  +AIVDKRR   NV+EVMNLIGDV+G+  V+VDDMIDT GT+ K A  L + GA+ V+A  THAVF
Sbjct:  143 VDNIFGTPVLLEDMHARGLE--DPVVVSPDLGGVVRARATAKALGDIDIAIVDKRRPRANVSEVMNLIGDVEGRDCVIVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVF 253          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_VIBPA (Ribose-phosphate pyrophosphokinase OS=Vibrio parahaemolyticus GN=prs PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+++  PV+L+ + S+ + +   VVVSPD+GGV RARA AK L D  +AIVDKRR   NV+EVMNLIGDV+G+  V+VDDMIDT GT+ K A  L + GA+ V+A  THAVF
Sbjct:  143 VDNIFGTPVLLEDMQSRGLDNP--VVVSPDLGGVVRARATAKALGDIDIAIVDKRRPRANVSEVMNLIGDVEGRDCVIVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVF 253          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_OCEIH (Ribose-phosphate pyrophosphokinase OS=Oceanobacillus iheyensis GN=prs PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.633e-27
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+   P++  Y   K +  +D++VVSPD GGV RAR  A +L  AP+ I+DKRR   NVAE+MN+IG+++GK A+++DD+IDTAGTI   A  L + GA+EVYACCTH V
Sbjct:  148 IDHLQGVPILSSYFEQKNL--DDVIVVSPDHGGVTRARKMADRLK-APIGIIDKRRPKPNVAEIMNIIGNIEGKTAILIDDIIDTAGTITLAANALIENGAKEVYACCTHPV 256          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_MARMS (Ribose-phosphate pyrophosphokinase OS=Marinomonas sp. (strain MWYL1) GN=prs PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.700e-26
Identity = 63/112 (56.25%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD+VY  P++LD L  +     ++ VVSPDVGGV RARAFAK L DA LAI+DKRR   N A++M+LIGDV+GK  V+VDDM DT GT+   A  L + GA +V A CTH V
Sbjct:  143 VDNVYATPLLLDDLQRQ--GHENITVVSPDVGGVVRARAFAKLLDDADLAIIDKRRPRANEAQIMHLIGDVEGKTCVLVDDMCDTGGTLCAAAKALKEHGAAKVLAYCTHPV 252          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_RALSO (Ribose-phosphate pyrophosphokinase OS=Ralstonia solanacearum GN=prs PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.221e-26
Identity = 61/112 (54.46%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD++Y  P++L+ L  K    ++L+VVSPDVGGV RARA AK+L    LAI+DKRR   NVAEVMN+IG+V+G+  V++DDMIDT GT+ K A +L + GA++V++ CTH V
Sbjct:  145 VDNIYASPILLEDLRKKNY--DNLLVVSPDVGGVVRARALAKQLG-VDLAIIDKRRPKANVAEVMNIIGEVEGRNCVIMDDMIDTGGTLCKAAQVLKERGAKQVFSYCTHPV 253          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_LISMO (Ribose-phosphate pyrophosphokinase 1 OS=Listeria monocytogenes GN=prs1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.901e-26
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+    ++ DY + + +  +DLVVVSPD GGV RAR  A +L  AP+AI+DKRR   NVAEVMN++G+V+GKV +++DD+IDTAGTI   A  L + GA +VYACC+H V
Sbjct:  148 IDHLNAVRLLSDYFSERHLG-DDLVVVSPDHGGVTRARKMADRLK-APIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPV 257          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_LISMF (Ribose-phosphate pyrophosphokinase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=prs1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.901e-26
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+    ++ DY + + +  +DLVVVSPD GGV RAR  A +L  AP+AI+DKRR   NVAEVMN++G+V+GKV +++DD+IDTAGTI   A  L + GA +VYACC+H V
Sbjct:  148 IDHLNAVRLLSDYFSERHLG-DDLVVVSPDHGGVTRARKMADRLK-APIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPV 257          
The following BLAST results are available for this feature:
BLAST of DY258200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
KPRS_CLOTE4.475e-2753.98Ribose-phosphate pyrophosphokinase OS=Clostridium ... [more]
KPRS_XANCP5.844e-2756.25Ribose-phosphate pyrophosphokinase OS=Xanthomonas ... [more]
KPRS_VIBVY7.633e-2756.64Ribose-phosphate pyrophosphokinase OS=Vibrio vulni... [more]
KPRS_VIBVU7.633e-2756.64Ribose-phosphate pyrophosphokinase OS=Vibrio vulni... [more]
KPRS_VIBPA7.633e-2756.64Ribose-phosphate pyrophosphokinase OS=Vibrio parah... [more]
KPRS_OCEIH7.633e-2752.68Ribose-phosphate pyrophosphokinase OS=Oceanobacill... [more]
KPRS_MARMS1.700e-2656.25Ribose-phosphate pyrophosphokinase OS=Marinomonas ... [more]
KPRS_RALSO2.221e-2654.46Ribose-phosphate pyrophosphokinase OS=Ralstonia so... [more]
KPRS1_LISMO2.901e-2653.57Ribose-phosphate pyrophosphokinase 1 OS=Listeria m... [more]
KPRS1_LISMF2.901e-2653.57Ribose-phosphate pyrophosphokinase 1 OS=Listeria m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258200 ID=DY258200; Name=DY258200; organism=Citrus clementina; type=EST; length=919bp
GTGGACCATGTATACTGTCAGCCTGTGATTCTTGATTACCTTGCTAGCAA
GACGGTTTCTTCTAATGATTTGGTGGTGGTTTCACCTGATGTCGGTGGAG
TGGCAAGAGCACGTGCTTTTGCCAAAAAGTTATCTGATGCTCCTTTAGCC
ATAGTAGATAAAAGGCGTCATGGACACAATGTTGCAGAGGTGATGAACCT
TATTGGCGATGTAAAAGGAAAAGTTGCAGTAATGGTGGATGACATGATTG
ACACTGCTGGGACTATTGCAAAAGGTGCAGCTCTTTTACATCAAGAAGGG
GCCAGGGAAGTTTATGCATGCTGCACGCATGCAGTTTTCAGGTTGGATTA
CAAATCATAAATTTATCAACTTGATCTCTTTTGACCCATTAACATTCCGA
CAAATAGATTAGATCGCAATTCTGATTCTTTTGCCATCACCTTCTGATAC
TTCCTTGGTCGAGCATCTATTCAACACCTGATGATGAGGAGAGGGTGACA
GCCCCTAACTAGAGGAAGAACCTCGGGGTATCAAGCCAGATGAAAGCTCC
CTCCTGCAATAGAGAGGTTGTCAGGTGGCCTGTTTCAAGAGGTGATCGTT
ACAAATACAATCCCAGTGGCAGAGAAGAACTACTTCCCTGAGTTGACTGT
TCTTTCTATAGCCAACCTGTTGGGTGAGACTATATGGCGTGTTCACGATG
ATTGTTCCGTAAGTAGCATTTTTCAATGAAGTCAGGGAGATATCGAGTGA
TGGTAGCTGCTTCAACTGGTAAAAGGCGTAGAATCGAGTAGGTCTCATAT
CTTTAGGTAGTCTAGCATAAGGGGAAAATTAATCTTATATGCTTTCTCAT
TTGTTAATTTTAATTTTCACTACATTTTTATTGGGCATTAAAGTTTCATC
ATGAATGATGATTCCCATT
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