DY258200

Overview
NameDY258200
Unique NameDY258200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15384 contig Ccv1_Contig15384:319..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_LISIN (Ribose-phosphate pyrophosphokinase 1 OS=Listeria innocua GN=prs1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.901e-26
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+    ++ DY + + +  +DLVVVSPD GGV RAR  A +L  AP+AI+DKRR   NVAEVMN++G+V+GKV +++DD+IDTAGTI   A  L + GA +VYACC+H V
Sbjct:  148 IDHLNAVRLLSDYFSERHLG-DDLVVVSPDHGGVTRARKMADRLK-APIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPV 257          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_SHEON (Ribose-phosphate pyrophosphokinase OS=Shewanella oneidensis GN=prs PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.948e-26
Identity = 61/113 (53.98%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+V+  PV+L+ + +K + +   VVVSPD+GGV RARA AK L D+ LAI+DKRR   NVA+VM++IGDV+G+  ++VDDMIDT GT+ K A  L + GA  V+A  TH VF
Sbjct:  143 VDNVFGSPVLLEDMLAKKLDNP--VVVSPDIGGVVRARAVAKLLDDSDLAIIDKRRPQANVAQVMHIIGDVQGRDCIIVDDMIDTGGTLCKAAEALKEHGANRVFAYATHPVF 253          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_CHRVO (Ribose-phosphate pyrophosphokinase OS=Chromobacterium violaceum GN=prs PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.948e-26
Identity = 64/113 (56.64%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+VY  PV+L  + ++    +DL+VVSPDVGGV RARA AK L+   LAI+DKRR   NVAEVMN+IGDV G+  ++VDDMIDTA T+ K A+ L + GA  V A  THA+F
Sbjct:  146 VDNVYATPVLLKDIRAQRF--DDLIVVSPDVGGVVRARAVAKALN-TDLAIIDKRRPKANVAEVMNIIGDVSGRTCLIVDDMIDTANTLCKAASALKERGAERVLAYATHAIF 255          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_PASMU (Ribose-phosphate pyrophosphokinase OS=Pasteurella multocida GN=prs PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.462e-26
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+V+  PV++  +  K    N  +VVSPD+GGV RARA AK L+D  +AI+DKRR   NVA+VM++IGDV G+  ++VDDMIDT GT+ K A  L + GA+ V+A  THAVF
Sbjct:  143 VDNVFGSPVLVHDMLKKIDMQNP-IVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVAQVMHIIGDVAGRDCILVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVF 254          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_BACHD (Ribose-phosphate pyrophosphokinase OS=Bacillus halodurans GN=prs PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.462e-26
Identity = 60/112 (53.57%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD +   P++ ++   K +  +D+VVVSPD GGV RAR  A +L  AP+AI+DKRR   NVAEVMN++G ++GK A+++DD+IDTAGTI   A  L + GA+EVYACCTH V
Sbjct:  147 VDQLMGVPILAEFFEKKGL--DDVVVVSPDHGGVVRARKLADRLK-APIAIIDKRRPKPNVAEVMNIVGHIEGKTAIIIDDIIDTAGTITLAANALVEHGAKEVYACCTHPV 255          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_XYLFA (Ribose-phosphate pyrophosphokinase OS=Xylella fastidiosa GN=prs PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.439e-26
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD+VY  P++L  +  +   +++L+VVSPDVGGV RARA AK+L D  LAI+DKRR   NVA VMN+IG+V GK  V+VDD++DTAGT+   A  L Q GA +V A  TH V
Sbjct:  149 VDNVYASPLLLADIW-RAYGTDNLIVVSPDVGGVVRARAMAKRLGDTDLAIIDKRRPRANVATVMNIIGEVNGKTCVLVDDLVDTAGTLCAAAVALKQNGATKVVAYITHPV 259          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_STAS1 (Ribose-phosphate pyrophosphokinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=prs PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.102e-25
Identity = 57/113 (50.44%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKT-VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +DH+   P++  Y  ++T +   + VVVSPD GGV RAR  A  L   P+AI+DKRR   NVAEVMN++G+++G+ A+++DD+IDTAGTI   A  L  +GA++VYACCTH V
Sbjct:  149 IDHLMGVPILAQYFKNETDIDPEECVVVSPDHGGVTRARKLADILK-TPIAIIDKRRPKPNVAEVMNIVGEIEGRTAIIIDDIIDTAGTITLAAQALKDKGAKDVYACCTHPV 260          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_STAES (Ribose-phosphate pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=prs PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.102e-25
Identity = 66/152 (43.42%), Postives = 93/152 (61.18%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKT-VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDYK-----S*IYQLDLF*PINIPTNRLDRNSDSFAI 438
            +DH+   P++  +  +   ++  + VVVSPD GGV RAR  A  L   P+AI+DKRR   NVAEVMN++GD++G+ A+++DD+IDTAGTI   A  L  +GA+EVYACCTH V     K     S I QL +   I +  NR   N+   ++
Sbjct:  149 IDHLMGVPILAQHFENDPDINPEECVVVSPDHGGVTRARKLADILK-TPIAIIDKRRPKPNVAEVMNIVGDIEGRTAIIIDDIIDTAGTITLAAQALKDKGAKEVYACCTHPVLSGPAKERIENSAIKQLIVTNSIQLEENRKPNNTKELSV 299          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_STAEQ (Ribose-phosphate pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=prs PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.102e-25
Identity = 66/152 (43.42%), Postives = 93/152 (61.18%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKT-VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDYK-----S*IYQLDLF*PINIPTNRLDRNSDSFAI 438
            +DH+   P++  +  +   ++  + VVVSPD GGV RAR  A  L   P+AI+DKRR   NVAEVMN++GD++G+ A+++DD+IDTAGTI   A  L  +GA+EVYACCTH V     K     S I QL +   I +  NR   N+   ++
Sbjct:  149 IDHLMGVPILAQHFENDPDINPEECVVVSPDHGGVTRARKLADILK-TPIAIIDKRRPKPNVAEVMNIVGDIEGRTAIIIDDIIDTAGTITLAAQALKDKGAKEVYACCTHPVLSGPAKERIENSAIKQLIVTNSIQLEENRKPNNTKELSV 299          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_BORPE (Ribose-phosphate pyrophosphokinase OS=Bordetella pertussis GN=prs PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.102e-25
Identity = 61/112 (54.46%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD++Y  P++L  +  +  S+  LVVVSPD+GGV RARA AK+L +A LAI+DKRR   NV+EVMN+IG+V G+  +++DDM+DTAGT+ K A  L   GA  VYA CTH V
Sbjct:  139 VDNIYAGPILLGDIWRRNFSN--LVVVSPDIGGVVRARALAKQL-EADLAIIDKRRPRANVSEVMNIIGEVDGRTCIIMDDMVDTAGTLCKAAQALKDRGAGAVYAYCTHPV 247          
The following BLAST results are available for this feature:
BLAST of DY258200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
KPRS1_LISIN2.901e-2653.57Ribose-phosphate pyrophosphokinase 1 OS=Listeria i... [more]
KPRS_SHEON4.948e-2653.98Ribose-phosphate pyrophosphokinase OS=Shewanella o... [more]
KPRS_CHRVO4.948e-2656.64Ribose-phosphate pyrophosphokinase OS=Chromobacter... [more]
KPRS_PASMU6.462e-2653.10Ribose-phosphate pyrophosphokinase OS=Pasteurella ... [more]
KPRS_BACHD6.462e-2653.57Ribose-phosphate pyrophosphokinase OS=Bacillus hal... [more]
KPRS_XYLFA8.439e-2654.46Ribose-phosphate pyrophosphokinase OS=Xylella fast... [more]
KPRS_STAS11.102e-2550.44Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_STAES1.102e-2543.42Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_STAEQ1.102e-2543.42Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_BORPE1.102e-2554.46Ribose-phosphate pyrophosphokinase OS=Bordetella p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258200 ID=DY258200; Name=DY258200; organism=Citrus clementina; type=EST; length=919bp
GTGGACCATGTATACTGTCAGCCTGTGATTCTTGATTACCTTGCTAGCAA
GACGGTTTCTTCTAATGATTTGGTGGTGGTTTCACCTGATGTCGGTGGAG
TGGCAAGAGCACGTGCTTTTGCCAAAAAGTTATCTGATGCTCCTTTAGCC
ATAGTAGATAAAAGGCGTCATGGACACAATGTTGCAGAGGTGATGAACCT
TATTGGCGATGTAAAAGGAAAAGTTGCAGTAATGGTGGATGACATGATTG
ACACTGCTGGGACTATTGCAAAAGGTGCAGCTCTTTTACATCAAGAAGGG
GCCAGGGAAGTTTATGCATGCTGCACGCATGCAGTTTTCAGGTTGGATTA
CAAATCATAAATTTATCAACTTGATCTCTTTTGACCCATTAACATTCCGA
CAAATAGATTAGATCGCAATTCTGATTCTTTTGCCATCACCTTCTGATAC
TTCCTTGGTCGAGCATCTATTCAACACCTGATGATGAGGAGAGGGTGACA
GCCCCTAACTAGAGGAAGAACCTCGGGGTATCAAGCCAGATGAAAGCTCC
CTCCTGCAATAGAGAGGTTGTCAGGTGGCCTGTTTCAAGAGGTGATCGTT
ACAAATACAATCCCAGTGGCAGAGAAGAACTACTTCCCTGAGTTGACTGT
TCTTTCTATAGCCAACCTGTTGGGTGAGACTATATGGCGTGTTCACGATG
ATTGTTCCGTAAGTAGCATTTTTCAATGAAGTCAGGGAGATATCGAGTGA
TGGTAGCTGCTTCAACTGGTAAAAGGCGTAGAATCGAGTAGGTCTCATAT
CTTTAGGTAGTCTAGCATAAGGGGAAAATTAATCTTATATGCTTTCTCAT
TTGTTAATTTTAATTTTCACTACATTTTTATTGGGCATTAAAGTTTCATC
ATGAATGATGATTCCCATT
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