DY258200

Overview
NameDY258200
Unique NameDY258200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15384 contig Ccv1_Contig15384:319..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_PSEPK (Ribose-phosphate pyrophosphokinase OS=Pseudomonas putida (strain KT2440) GN=prs PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.899e-24
Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD++Y  PV++D +  +   +  L++VSPD+GGV RARA AK L    L I+DKRR   N +EVM++IGDV+G+  ++VDDM+DTAGT+   A  L + GA +VYA CTH V
Sbjct:  143 VDNIYGSPVLVDDIEDQRFEN--LMIVSPDIGGVVRARAVAKSLG-VDLGIIDKRREKANHSEVMHIIGDVEGRTCILVDDMVDTAGTLCHAAKALKEHGAAKVYAYCTHPV 251          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_STRR6 (Ribose-phosphate pyrophosphokinase 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=prs1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.899e-24
Identity = 72/165 (43.64%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLD-----YKS*IYQLDLF*PINIPTNRLDRNSDSFAITF*YFLGRASIQ 474
            VDH+   P+I DY   + +  +D VVVSPD GGV RAR  A+ L  + +AI+DKRR     N +EVMN+IG V+GK  +++DDMIDTAGTI   A  L + GA EVYA CTH V          KS I +L +   I +P  RL    +  +I   + LG A ++
Sbjct:  144 VDHLMGAPLIADYFERRGMVGSDYVVVSPDHGGVTRARKLAEFLKTS-IAIIDKRRSVDKMNTSEVMNIIGKVEGKTCILIDDMIDTAGTICHAADALAEAGAVEVYASCTHPVLSGPATDNIQKSAIKKLVVLDTIYLPEERLIDKIEQISIA--HLLGDAIVR 305          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_STRPN (Ribose-phosphate pyrophosphokinase 1 OS=Streptococcus pneumoniae GN=prs1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.899e-24
Identity = 72/165 (43.64%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLD-----YKS*IYQLDLF*PINIPTNRLDRNSDSFAITF*YFLGRASIQ 474
            VDH+   P+I DY   + +  +D VVVSPD GGV RAR  A+ L  + +AI+DKRR     N +EVMN+IG V+GK  +++DDMIDTAGTI   A  L + GA EVYA CTH V          KS I +L +   I +P  RL    +  +I   + LG A ++
Sbjct:  144 VDHLMGAPLIADYFERRGMVGSDYVVVSPDHGGVTRARKLAEFLKTS-IAIIDKRRSVDKMNTSEVMNIIGKVEGKTCILIDDMIDTAGTICHAADALAEAGAVEVYASCTHPVLSGPATDNIQKSAIKKLVVLDTIYLPEERLIDKIEQISIA--HLLGDAIVR 305          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_WOLSU (Ribose-phosphate pyrophosphokinase OS=Wolinella succinogenes GN=prs PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.347e-23
Identity = 61/113 (53.98%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD++Y   V  DY+ SK + +   ++ SPD+GGVARAR FA +L    L IVDK+R   NV+EVMN+IGDV+GK  ++VDDMIDTAGT+AK A +L  +GA  V A  TH VF
Sbjct:  142 VDNLYGSIVFRDYVKSKHLPNP--IIASPDIGGVARARYFADQLG-LDLVIVDKKREKANVSEVMNIIGDVQGKDVILVDDMIDTAGTMAKAAEVLKSKGATSVIALGTHPVF 251          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_BLOFL (Ribose-phosphate pyrophosphokinase OS=Blochmannia floridanus GN=prs PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.347e-23
Identity = 53/113 (46.90%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+V+  P++L+ +  +    N+ +VVSPD+GGV RARA AK  +D  +AI+DKRR   NV+++MN+IGDV  +  +++DDMIDT GT+ K A +L  +GA  V+A  TH +F
Sbjct:  140 VDNVFGSPILLEDMLQQKF--NNPIVVSPDIGGVMRARAIAKLFNDTDMAIIDKRRPRSNVSQIMNIIGDVYNRDCILIDDMIDTGGTLCKAADVLKDKGACRVFAYATHPIF 250          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_STRP8 (Ribose-phosphate pyrophosphokinase 1 OS=Streptococcus pyogenes serotype M18 GN=prs1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 69/144 (47.92%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF---RLD--YKS*IYQLDLF*PINIPTNRL 411
            VDH+   P+I DY     +   D+VVVSPD GGV RAR  A+ L   P+AI+DKRR     N +EVMN+IG+V GK  +++DDMIDTAGTI   A  L + GA  VYA CTH V     LD   +S I +L +   I +P  RL
Sbjct:  144 VDHLMGAPLIADYFDRHGLVGEDVVVVSPDHGGVTRARKLAQFLQ-TPIAIIDKRRSVDKMNTSEVMNIIGNVSGKKCILIDDMIDTAGTICHAADALAEAGATAVYASCTHPVLSGPALDNIQRSAIEKLIVLDTIYLPKERL 286          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_STRP6 (Ribose-phosphate pyrophosphokinase 1 OS=Streptococcus pyogenes serotype M6 GN=prs1 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 69/144 (47.92%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF---RLD--YKS*IYQLDLF*PINIPTNRL 411
            VDH+   P+I DY     +   D+VVVSPD GGV RAR  A+ L   P+AI+DKRR     N +EVMN+IG+V GK  +++DDMIDTAGTI   A  L + GA  VYA CTH V     LD   +S I +L +   I +P  RL
Sbjct:  144 VDHLMGAPLIADYFDRHGLVGEDVVVVSPDHGGVTRARKLAQFLQ-TPIAIIDKRRSVDKMNTSEVMNIIGNVSGKKCILIDDMIDTAGTICHAADALAEAGATAVYASCTHPVLSGPALDNIQRSAIEKLIVLDTIYLPKERL 286          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_STRP3 (Ribose-phosphate pyrophosphokinase 1 OS=Streptococcus pyogenes serotype M3 GN=prs1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 69/144 (47.92%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF---RLD--YKS*IYQLDLF*PINIPTNRL 411
            VDH+   P+I DY     +   D+VVVSPD GGV RAR  A+ L   P+AI+DKRR     N +EVMN+IG+V GK  +++DDMIDTAGTI   A  L + GA  VYA CTH V     LD   +S I +L +   I +P  RL
Sbjct:  144 VDHLMGAPLIADYFDRHGLVGEDVVVVSPDHGGVTRARKLAQFLQ-TPIAIIDKRRSVDKMNTSEVMNIIGNVSGKKCILIDDMIDTAGTICHAADALAEAGATAVYASCTHPVLSGPALDNIQRSAIEKLIVLDTIYLPKERL 286          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS1_STRP1 (Ribose-phosphate pyrophosphokinase 1 OS=Streptococcus pyogenes serotype M1 GN=prs1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 69/144 (47.92%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF---RLD--YKS*IYQLDLF*PINIPTNRL 411
            VDH+   P+I DY     +   D+VVVSPD GGV RAR  A+ L   P+AI+DKRR     N +EVMN+IG+V GK  +++DDMIDTAGTI   A  L + GA  VYA CTH V     LD   +S I +L +   I +P  RL
Sbjct:  144 VDHLMGAPLIADYFDRHGLVGEDVVVVSPDHGGVTRARKLAQFLQ-TPIAIIDKRRSVDKMNTSEVMNIIGNVSGKKCILIDDMIDTAGTICHAADALAEAGATAVYASCTHPVLSGPALDNIQRSAIEKLIVLDTIYLPKERL 286          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_PSESM (Ribose-phosphate pyrophosphokinase OS=Pseudomonas syringae pv. tomato GN=prs PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.298e-23
Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD++Y  PV++D +  +   +  L++VSPD+GGV RARA AK L    L I+DKRR   N +EVM++IGDV+G+  ++VDDM+DTAGT+   A  L + GA +V+A CTH V
Sbjct:  143 VDNIYGSPVLVDDIEDQRFEN--LMIVSPDIGGVVRARAVAKSLG-VDLGIIDKRREKANHSEVMHIIGDVEGRTCILVDDMVDTAGTLCHAAKALKEHGAAKVFAYCTHPV 251          
The following BLAST results are available for this feature:
BLAST of DY258200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
KPRS_PSEPK7.899e-2450.00Ribose-phosphate pyrophosphokinase OS=Pseudomonas ... [more]
KPRS1_STRR67.899e-2443.64Ribose-phosphate pyrophosphokinase 1 OS=Streptococ... [more]
KPRS1_STRPN7.899e-2443.64Ribose-phosphate pyrophosphokinase 1 OS=Streptococ... [more]
KPRS_WOLSU1.347e-2353.98Ribose-phosphate pyrophosphokinase OS=Wolinella su... [more]
KPRS_BLOFL1.347e-2346.90Ribose-phosphate pyrophosphokinase OS=Blochmannia ... [more]
KPRS1_STRP81.760e-2347.92Ribose-phosphate pyrophosphokinase 1 OS=Streptococ... [more]
KPRS1_STRP61.760e-2347.92Ribose-phosphate pyrophosphokinase 1 OS=Streptococ... [more]
KPRS1_STRP31.760e-2347.92Ribose-phosphate pyrophosphokinase 1 OS=Streptococ... [more]
KPRS1_STRP11.760e-2347.92Ribose-phosphate pyrophosphokinase 1 OS=Streptococ... [more]
KPRS_PSESM2.298e-2349.11Ribose-phosphate pyrophosphokinase OS=Pseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258200 ID=DY258200; Name=DY258200; organism=Citrus clementina; type=EST; length=919bp
GTGGACCATGTATACTGTCAGCCTGTGATTCTTGATTACCTTGCTAGCAA
GACGGTTTCTTCTAATGATTTGGTGGTGGTTTCACCTGATGTCGGTGGAG
TGGCAAGAGCACGTGCTTTTGCCAAAAAGTTATCTGATGCTCCTTTAGCC
ATAGTAGATAAAAGGCGTCATGGACACAATGTTGCAGAGGTGATGAACCT
TATTGGCGATGTAAAAGGAAAAGTTGCAGTAATGGTGGATGACATGATTG
ACACTGCTGGGACTATTGCAAAAGGTGCAGCTCTTTTACATCAAGAAGGG
GCCAGGGAAGTTTATGCATGCTGCACGCATGCAGTTTTCAGGTTGGATTA
CAAATCATAAATTTATCAACTTGATCTCTTTTGACCCATTAACATTCCGA
CAAATAGATTAGATCGCAATTCTGATTCTTTTGCCATCACCTTCTGATAC
TTCCTTGGTCGAGCATCTATTCAACACCTGATGATGAGGAGAGGGTGACA
GCCCCTAACTAGAGGAAGAACCTCGGGGTATCAAGCCAGATGAAAGCTCC
CTCCTGCAATAGAGAGGTTGTCAGGTGGCCTGTTTCAAGAGGTGATCGTT
ACAAATACAATCCCAGTGGCAGAGAAGAACTACTTCCCTGAGTTGACTGT
TCTTTCTATAGCCAACCTGTTGGGTGAGACTATATGGCGTGTTCACGATG
ATTGTTCCGTAAGTAGCATTTTTCAATGAAGTCAGGGAGATATCGAGTGA
TGGTAGCTGCTTCAACTGGTAAAAGGCGTAGAATCGAGTAGGTCTCATAT
CTTTAGGTAGTCTAGCATAAGGGGAAAATTAATCTTATATGCTTTCTCAT
TTGTTAATTTTAATTTTCACTACATTTTTATTGGGCATTAAAGTTTCATC
ATGAATGATGATTCCCATT
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