DY258200

Overview
NameDY258200
Unique NameDY258200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15384 contig Ccv1_Contig15384:319..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_PSEAE (Ribose-phosphate pyrophosphokinase OS=Pseudomonas aeruginosa GN=prs PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.298e-23
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD++Y  PV++D +  +   +  L++VSPD+GGV RARA AK L    LAI+DKRR   N +EVM++IGDV+G+  V+VDDM+DTAGT+   A  L + GA +V A CTH V
Sbjct:  143 VDNIYGSPVLVDDIEDQRFEN--LMIVSPDIGGVVRARAVAKSLG-VDLAIIDKRRPKANQSEVMHIIGDVEGRTCVLVDDMVDTAGTLGHAAKALKEHGAAKVIAYCTHPV 251          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_BUCAI (Ribose-phosphate pyrophosphokinase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=prs PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.298e-23
Identity = 55/116 (47.41%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLD 348
            VD+V+   ++L+ +  + + +   +VVSPD+GGV RARA AK L D  +AI+DKRR   NV+++MN+IGDV  +  ++VDDMIDT GT+ K A  L + GA+ V+A  TH VF  D
Sbjct:  143 VDNVFGSLILLEDMLQRELKNP--IVVSPDIGGVVRARAIAKLLYDTDMAIIDKRRPRANVSQIMNIIGDVANRDCILVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPVFSGD 256          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_THEMA (Ribose-phosphate pyrophosphokinase OS=Thermotoga maritima GN=prs PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.920e-23
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASK-TVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+++  PV  + L  +  +   + VVVSPDVGGV RAR  A++L  + LAI+DKRR   NVAEV+N+IG+V+ KV +M DD+IDTA +I KGA  L   GA+ + AC TH VF
Sbjct:  145 VDNLWSYPVFAEELLKRENIVPEETVVVSPDVGGVRRARRMAERLGTS-LAILDKRRPSDNVAEVVNIIGEVEDKVVIMFDDIIDTAHSIVKGAEALKNAGAKRIIACATHGVF 257          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_THEAB (Ribose-phosphate pyrophosphokinase OS=Thermosipho africanus (strain TCF52B) GN=prs PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.920e-23
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            +D+++  P+    L    +  +D V+VSPDVGGV RAR FA++L   PLAI+DKRR   NVAE++N+IG+V+GK A++VDD+ DTA ++   A  + ++GA+ V AC TH V
Sbjct:  146 LDNLWSFPIFAKKLKEDKIVDDDYVIVSPDVGGVKRARQFAERLG-GPLAILDKRRPKDNVAEILNIIGEVEGKTAIIVDDIADTARSLVNAAKAIKEKGAKRVIACITHPV 256          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_BAUCH (Ribose-phosphate pyrophosphokinase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=prs PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.120e-23
Identity = 53/113 (46.90%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+V+  P++L+ +  +    N+ +VVSPD+GGV RARA AK L+D  +AI+DKRR   N+++VM++IG+V  +  V+VDDMIDT+ T+ K A  L + GA+ V+A  TH +F
Sbjct:  140 VDNVFGSPILLEDMLQQDF--NNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANMSQVMHIIGEVADRDCVLVDDMIDTSSTLCKAAEALKEHGAKRVFAYATHPIF 250          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_HYPNA (Ribose-phosphate pyrophosphokinase OS=Hyphomonas neptunium (strain ATCC 15444) GN=prs PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.490e-22
Identity = 56/111 (50.45%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    4 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            D+++  PV++D +  +      ++VVSPDVGGV RAR+ AK+L DA LAIVDKRR     +EVMN+IGDV+G   +M+DDM D+ GT+A  AA L + GA  V A  TH V
Sbjct:  140 DNLFGGPVMVDDIKER-YGKEKIIVVSPDVGGVVRARSLAKRLDDADLAIVDKRRPEAGKSEVMNIIGDVRGARCIMLDDMCDSGGTLANAAAALKEHGASSVSAYVTHGV 249          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_BUCAP (Ribose-phosphate pyrophosphokinase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=prs PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.946e-22
Identity = 51/113 (45.13%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            VD+V+   ++L+ +  + + +   +VVSPD+GGV RARA AK L D  +AI+DKRR   N++++M++IGDV  +  ++VDDMIDT GT+ K A  L + GA+ V+A  TH +F
Sbjct:  143 VDNVFGSLILLEDMLQRELKNP--IVVSPDIGGVVRARAIAKLLYDTDMAIIDKRRPRPNISQIMHIIGDVANRDCILVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIF 253          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_NITEU (Ribose-phosphate pyrophosphokinase OS=Nitrosomonas europaea GN=prs PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.541e-22
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD+VY  P++L  +      +  L+VVSPDVGGV RAR  AK+L +  LAI+DKRR   N ++VMN+IGDV+G+  V++DDM+DTA T+ + A+ L +EGA  V A  THAV
Sbjct:  145 VDNVYGMPILLGDIWKHDYQN--LIVVSPDVGGVVRARHLAKRL-ECDLAIIDKRRPKPNESKVMNIIGDVRGRTCVIIDDMVDTANTLCEAASALKREGAASVIAYSTHAV 253          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_HELHP (Ribose-phosphate pyrophosphokinase OS=Helicobacter hepaticus GN=prs PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.661e-22
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 336
            VD++Y   V  DYL  KT S  + +V SPD+GGVARAR FA ++    L IVDK+R   N +EVMN+IGDV GK  +++DDMIDTAGT+ K A +L   GA  V A  TH V
Sbjct:  142 VDNLYGSIVFRDYL--KTKSFKNPIVASPDIGGVARARHFADRIG-MDLVIVDKKRERANESEVMNIIGDVDGKDVILIDDMIDTAGTMCKAADVLKSRGANSVIALGTHPV 250          
BLAST of DY258200 vs. ExPASy Swiss-Prot
Match: KPRS_AQUAE (Ribose-phosphate pyrophosphokinase OS=Aquifex aeolicus GN=prs PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.393e-22
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 VDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 339
            V+H+   PV+ DY+    V  N  +VVSPD GGV RAR  A KL    + ++ KRR   N AEVM+++GD++GK A++VDD+IDTAGT+   A LL  +G + V AC TH +F
Sbjct:  142 VEHLTAIPVLYDYIRKNVVLENP-IVVSPDAGGVKRARDLANKLG-CGIGVILKRRPEPNKAEVMDVVGDIEGKEAIIVDDIIDTAGTLVAAANLLVNKGVKRVIACATHGIF 252          
The following BLAST results are available for this feature:
BLAST of DY258200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
KPRS_PSEAE2.298e-2350.89Ribose-phosphate pyrophosphokinase OS=Pseudomonas ... [more]
KPRS_BUCAI2.298e-2347.41Ribose-phosphate pyrophosphokinase OS=Buchnera aph... [more]
KPRS_THEMA3.920e-2350.88Ribose-phosphate pyrophosphokinase OS=Thermotoga m... [more]
KPRS_THEAB3.920e-2347.32Ribose-phosphate pyrophosphokinase OS=Thermosipho ... [more]
KPRS_BAUCH5.120e-2346.90Ribose-phosphate pyrophosphokinase OS=Baumannia ci... [more]
KPRS_HYPNA1.490e-2250.45Ribose-phosphate pyrophosphokinase OS=Hyphomonas n... [more]
KPRS_BUCAP1.946e-2245.13Ribose-phosphate pyrophosphokinase OS=Buchnera aph... [more]
KPRS_NITEU2.541e-2250.89Ribose-phosphate pyrophosphokinase OS=Nitrosomonas... [more]
KPRS_HELHP5.661e-2252.68Ribose-phosphate pyrophosphokinase OS=Helicobacter... [more]
KPRS_AQUAE7.393e-2247.79Ribose-phosphate pyrophosphokinase OS=Aquifex aeol... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CC05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258200 ID=DY258200; Name=DY258200; organism=Citrus clementina; type=EST; length=919bp
GTGGACCATGTATACTGTCAGCCTGTGATTCTTGATTACCTTGCTAGCAA
GACGGTTTCTTCTAATGATTTGGTGGTGGTTTCACCTGATGTCGGTGGAG
TGGCAAGAGCACGTGCTTTTGCCAAAAAGTTATCTGATGCTCCTTTAGCC
ATAGTAGATAAAAGGCGTCATGGACACAATGTTGCAGAGGTGATGAACCT
TATTGGCGATGTAAAAGGAAAAGTTGCAGTAATGGTGGATGACATGATTG
ACACTGCTGGGACTATTGCAAAAGGTGCAGCTCTTTTACATCAAGAAGGG
GCCAGGGAAGTTTATGCATGCTGCACGCATGCAGTTTTCAGGTTGGATTA
CAAATCATAAATTTATCAACTTGATCTCTTTTGACCCATTAACATTCCGA
CAAATAGATTAGATCGCAATTCTGATTCTTTTGCCATCACCTTCTGATAC
TTCCTTGGTCGAGCATCTATTCAACACCTGATGATGAGGAGAGGGTGACA
GCCCCTAACTAGAGGAAGAACCTCGGGGTATCAAGCCAGATGAAAGCTCC
CTCCTGCAATAGAGAGGTTGTCAGGTGGCCTGTTTCAAGAGGTGATCGTT
ACAAATACAATCCCAGTGGCAGAGAAGAACTACTTCCCTGAGTTGACTGT
TCTTTCTATAGCCAACCTGTTGGGTGAGACTATATGGCGTGTTCACGATG
ATTGTTCCGTAAGTAGCATTTTTCAATGAAGTCAGGGAGATATCGAGTGA
TGGTAGCTGCTTCAACTGGTAAAAGGCGTAGAATCGAGTAGGTCTCATAT
CTTTAGGTAGTCTAGCATAAGGGGAAAATTAATCTTATATGCTTTCTCAT
TTGTTAATTTTAATTTTCACTACATTTTTATTGGGCATTAAAGTTTCATC
ATGAATGATGATTCCCATT
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