DY258207

Overview
NameDY258207
Unique NameDY258207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 72/165 (43.64%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 752
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 176          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 72/165 (43.64%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 752
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 176          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 72/165 (43.64%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 752
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 176          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 72/165 (43.64%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 752
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +SFN  + W++E+ ++ S ++   LVGNK DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 176          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            K+V++GDS VGKS ++ R+ R +F+P SK T+G  F +Q++ + D   VK +IWDTAGQER+ A+   YYRG       YDIT   +F     W+ EL  H    +   L+GNK DL   R V  ++G   AE  G+FF+ETSA  + N+   FE + + +
Sbjct:   14 KIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREI 173          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.477e-32
Identity = 69/172 (40.12%), Postives = 104/172 (60.47%), Query Frame = 3
Query:  243 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            + D  +   KLVL+GDSGVGKS ++ RF + +F+  SK T+G  F ++++ + D+  +K +IWDTAGQERY A+   YYRG       YD+T   ++     W+KEL+ H  P+IV+ L+GNK+DL     V   +    AE+ G++F+ETSA  A N+   F E   ++ R
Sbjct:    6 ADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNI-DNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYR 176          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 5.477e-32
Identity = 65/157 (41.40%), Postives = 100/157 (63.69%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 740
            K+VL+GDSGVGKS ++ RF   +F+  SK T+G  F ++TI +++   +K +IWDTAGQERY A+   YYRG       YDI+   S+    +W+ EL+++   ++ + L+GNK+DL   R VP  +   +A +N M F ETSA  +DN+++ F E+
Sbjct:   15 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKK-IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 170          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.477e-32
Identity = 69/163 (42.33%), Postives = 100/163 (61.35%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +SFN  + W+ E+ ++   ++   LVGNK+DL  KR V      E+AE  G+ F+ETSAK A N+ + F  +A ++ +
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKK 171          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 5.477e-32
Identity = 69/163 (42.33%), Postives = 100/163 (61.35%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  QTI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +S+   + W++E+ +H S ++   LVGNK+DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F  +A  + +
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIEL-DGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 171          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.153e-32
Identity = 70/165 (42.42%), Postives = 105/165 (63.64%), Query Frame = 3
Query:  264 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            + KLV LGD  VGK+ I+ RF+  +FD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YD+++  +F     W++++ +  G  ++++ LVGNK DL EKR+V   +G +  ++ G+ FIETSAK   NI  LF +IA  LP
Sbjct:    9 KFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALP 172          
The following BLAST results are available for this feature:
BLAST of DY258207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_RAT4.193e-3243.64Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE4.193e-3243.64Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN4.193e-3243.64Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA4.193e-3243.64Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
ARA4_ARATH4.193e-3240.99Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
YPT3_NICPL5.477e-3240.12Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
YPT32_YEAST5.477e-3241.40GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
YPT1_PHYIN5.477e-3242.33Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1C_HUMAN5.477e-3242.33Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RBH1C_ARATH7.153e-3242.42Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258207 ID=DY258207; Name=DY258207; organism=Citrus clementina; type=EST; length=1033bp
GCGGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAA
TCAGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAA
TTACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATAT
TTATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGT
TCTGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGA
TGCAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTG
GGAAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACC
TCCAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCA
AGATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAA
GATATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTT
GTTGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTG
GGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAG
TTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGAT
GGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGC
CAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGAC
TTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTG
CTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGA
CTTGTGTATATTGTGATATATGATGTGGGTCCCCTGTTTCATTTTGCAAC
TGCATTATGATTTATGATTCTCACTTGGGAAACTTTCTGTGGCAAACTTA
AATCCTAAGGGGGGATATAAACCATTTAAACGCCGCAATGGAGGCACCAA
GAATTTGAATTAAAATATTTAACCCTTTTACCC
back to top