DY258207

Overview
NameDY258207
Unique NameDY258207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.220e-31
Identity = 68/159 (42.77%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            KL+L+GDSGVGK+C + RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF   + WV+ +++H SPD+   ++GNK D ++KR+V  + G + A   G+ F+ETSAK   NI   F  +A+
Sbjct:   10 KLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLAR 167          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.220e-31
Identity = 70/164 (42.68%), Postives = 102/164 (62.20%), Query Frame = 3
Query:  264 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            + KLV LGD  VGK+ I+ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YDIT+  SF     W+++++     ++V+ LVGNK DL +KR+V  ++G   A++  + F ETSAK   NI  LF ++A  LP
Sbjct:    6 KYKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALP 168          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 1.220e-31
Identity = 71/162 (43.83%), Postives = 107/162 (66.05%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            KLVLLG   VGKS + LR+V+  F      TVG +F ++ + +  +T++K EIWDTAGQE+Y ++  LY+RG       YDIT  DSF KAQ W+K+L++   P ++++ LVGNK DL ++REV  Q+G E+A+   + F+ETSAK    ++++F  +A+ L
Sbjct:   21 KLVLLGSGSVGKSSLALRYVKNDFKSILP-TVGCAFFTKVVDV-GATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQEL 180          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.220e-31
Identity = 71/176 (40.34%), Postives = 104/176 (59.09%), Query Frame = 3
Query:  258 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRLPRPSPSS 773
            +L  KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +T+ LQ    +K +IWDTAGQER+  +   YYRG       YDIT+  SF     W++ + +H + D+   L+GNK D+ +KR VP   G + A ++G+ F ETSAK   NI + F    E+I ++ P   P+S
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKK-IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNS 181          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.220e-31
Identity = 71/176 (40.34%), Postives = 104/176 (59.09%), Query Frame = 3
Query:  258 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRLPRPSPSS 773
            +L  KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +T+ LQ    +K +IWDTAGQER+  +   YYRG       YDIT+  SF     W++ + +H + D+   L+GNK D+ +KR VP   G + A ++G+ F ETSAK   NI + F    E+I ++ P   P+S
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKK-IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNS 181          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.220e-31
Identity = 71/176 (40.34%), Postives = 104/176 (59.09%), Query Frame = 3
Query:  258 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRLPRPSPSS 773
            +L  KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +T+ LQ    +K +IWDTAGQER+  +   YYRG       YDIT+  SF     W++ + +H + D+   L+GNK D+ +KR VP   G + A ++G+ F ETSAK   NI + F    E+I ++ P   P+S
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKK-IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNS 181          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.220e-31
Identity = 71/176 (40.34%), Postives = 104/176 (59.09%), Query Frame = 3
Query:  258 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRLPRPSPSS 773
            +L  KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +T+ LQ    +K +IWDTAGQER+  +   YYRG       YDIT+  SF     W++ + +H + D+   L+GNK D+ +KR VP   G + A ++G+ F ETSAK   NI + F    E+I ++ P   P+S
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKK-IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKEPNS 181          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.593e-31
Identity = 67/171 (39.18%), Postives = 109/171 (63.74%), Query Frame = 3
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            ++G+  + +  +K++L+GDSGVGKSC+++RFV  +F+P+   T+G  F  +T+ + +   VK ++WDTAGQER+  +   YYRG       YD+T   +F   + W K + +H + +  + LVGNK+D+ E R V A  G   A++ G+ FIE+SAK  DN+N++F  +AK
Sbjct:   10 SSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.593e-31
Identity = 63/155 (40.65%), Postives = 98/155 (63.23%), Query Frame = 3
Query:  267 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 731
            VK +++G   VGKSC++ RF+  +F   S  T+G  F S+ + +Q    VK +IWDTAGQER+ ++   YYRG       YD+T+ +S+N    W+ +++   SPD+ + LVGNKADL E+REV   +    A++NG+ F+ETSA T + + ++F
Sbjct:    8 VKFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKN-VKLQIWDTAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTEQREVTFLEASRIAQENGLLFMETSALTGEGVEEMF 161          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.593e-31
Identity = 61/158 (38.61%), Postives = 104/158 (65.82%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 743
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D+  +K +IWDTAGQE + ++   YYRG       YDIT  ++FN    W+++ ++H + ++ + LVGNK DL  +R V  ++G ++A+++G+ F+E SAKTA N+ + F + A
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTA 164          
The following BLAST results are available for this feature:
BLAST of DY258207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_CHICK1.220e-3142.77Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB6_DICDI1.220e-3142.68Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]
RAB17_HUMAN1.220e-3143.83Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]
RAB10_PONAB1.220e-3140.34Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.220e-3140.34Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.220e-3140.34Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA1.220e-3140.34Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
SEC4_YEAST1.593e-3139.18Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RAB4_DICDI1.593e-3140.65Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]
RAB2A_MAIZE1.593e-3138.61Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258207 ID=DY258207; Name=DY258207; organism=Citrus clementina; type=EST; length=1033bp
GCGGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAA
TCAGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAA
TTACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATAT
TTATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGT
TCTGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGA
TGCAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTG
GGAAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACC
TCCAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCA
AGATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAA
GATATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTT
GTTGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTG
GGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAG
TTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGAT
GGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGC
CAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGAC
TTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTG
CTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGA
CTTGTGTATATTGTGATATATGATGTGGGTCCCCTGTTTCATTTTGCAAC
TGCATTATGATTTATGATTCTCACTTGGGAAACTTTCTGTGGCAAACTTA
AATCCTAAGGGGGGATATAAACCATTTAAACGCCGCAATGGAGGCACCAA
GAATTTGAATTAAAATATTTAACCCTTTTACCC
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