DY258207

Overview
NameDY258207
Unique NameDY258207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1056 contig Ccv1_Contig1056:1..1033. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.011e-34
Identity = 75/157 (47.77%), Postives = 101/157 (64.33%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 740
            K+VL+GDSGVGKS I+ RF R +F   SK T+G  F ++T+ ++  T VK +IWDTAGQERY A+   YYRG       YDIT   +F+  Q W++EL+ H   +IV+ + GNK+DL   R V  +DG   AEK G+ F+ETSA  A NI + F+ I
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTI 169          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 146.747 bits (369), Expect = 2.011e-34
Identity = 73/163 (44.79%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKN + FIETSA  + N+ + F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 174          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 2.011e-34
Identity = 73/163 (44.79%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKN + FIETSA  + N+ + F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 174          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 146.747 bits (369), Expect = 2.011e-34
Identity = 73/163 (44.79%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKN + FIETSA  + N+ + F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 174          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 2.011e-34
Identity = 73/163 (44.79%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKN + FIETSA  + N+ + F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 174          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 2.011e-34
Identity = 74/163 (45.40%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA    N+   F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYR 174          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.627e-34
Identity = 73/157 (46.50%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 740
            K+VL+GDSGVGKS I+ RF R  F   SK T+G  F ++++ ++  T +K +IWDTAGQERY A+   YYRG       YDIT   SF+    W++EL+ H    IV+ +VGNK+DL   R V   +G   AEK G+FF+ETSA  A N+ + F+ I
Sbjct:   14 KMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKT-IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTI 169          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.627e-34
Identity = 71/154 (46.10%), Postives = 99/154 (64.29%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 731
            K+VL+GDS VGK+ I+ RF R +F   SK T+G  F ++T+ +Q  + VK +IWDTAGQERY A+   YYRG       YDIT   +F+    W++EL+ H   +IV+ L GNK DL ++R VP +D  E+A+K G+FF+ETSA  A  +   F
Sbjct:   17 KVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKS-VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAF 169          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.627e-34
Identity = 73/163 (44.79%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKN + FIETSA  + N+ + F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 174          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.430e-34
Identity = 73/163 (44.79%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            K VL+GDSGVGKS +++RF R +F+  SK T+G  F ++ I L D+  +K +IWDTAGQERY A+   YYRG       YDIT   SF+    W+KEL++H   +IV+ LVGNK DL   R V  ++   +A +N + FIETSA  A N+ + F+ +   + R
Sbjct:   12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVL-DNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFR 173          
The following BLAST results are available for this feature:
BLAST of DY258207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB2BV_BETVU2.011e-3447.77Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11B_RAT2.011e-3444.79Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE2.011e-3444.79Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN2.011e-3444.79Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN2.011e-3444.79Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11A_BOVIN2.011e-3445.40Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RGP2_ORYSJ2.627e-3446.50Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11C_TOBAC2.627e-3446.10Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RB11B_DISOM2.627e-3444.79Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
YPT3_SCHPO3.430e-3444.79GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258207 ID=DY258207; Name=DY258207; organism=Citrus clementina; type=EST; length=1033bp
GCGGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAA
TCAGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAA
TTACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATAT
TTATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGT
TCTGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGA
TGCAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTG
GGAAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACC
TCCAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCA
AGATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAA
GATATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTT
GTTGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTG
GGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAG
TTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGAT
GGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGC
CAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGAC
TTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTG
CTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGA
CTTGTGTATATTGTGATATATGATGTGGGTCCCCTGTTTCATTTTGCAAC
TGCATTATGATTTATGATTCTCACTTGGGAAACTTTCTGTGGCAAACTTA
AATCCTAAGGGGGGATATAAACCATTTAAACGCCGCAATGGAGGCACCAA
GAATTTGAATTAAAATATTTAACCCTTTTACCC
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