DY258207

Overview
NameDY258207
Unique NameDY258207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1056 contig Ccv1_Contig1056:1..1033. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 142.895 bits (359), Expect = 2.904e-33
Identity = 73/175 (41.71%), Postives = 108/175 (61.71%), Query Frame = 3
Query:  234 NAGSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            +AG      LR  KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR+V  ++G   A++  + FIETSAK   N+ QLF  +A  LP
Sbjct:    2 SAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 175          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.904e-33
Identity = 64/163 (39.26%), Postives = 107/163 (65.64%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ + + D   +K +IWDTAGQE + ++   YYRG       YDIT  ++FN    W+++ ++H S ++V+ L+GNK+DL  +R+V  ++G  +A ++G+ F+ETSAKTA N+ + F   AK + R
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 169          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.904e-33
Identity = 68/165 (41.21%), Postives = 102/165 (61.82%), Query Frame = 3
Query:  258 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            N   K+VL+G+SGVGK+ ++ RF R +F   S+ T+G  F ++T+ L  +  +K +IWDTAG ERY A+   YYRG       +D+T   ++   + W+KEL  H    IV+ LVGNK+DL + REVP ++   +AE NG+ F+ETSA  + N+   FE + K +
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 173          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 62/161 (38.51%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  ++FN    W+++ ++H +P++ + L+GNK DL  +R V  ++G ++A+++G+ F+ETSA+TA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEI 167          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 62/161 (38.51%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  ++FN    W+++ ++H +P++ + L+GNK DL  +R V  ++G ++A+++G+ F+ETSA+TA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEI 167          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 69/169 (40.83%), Postives = 104/169 (61.54%), Query Frame = 3
Query:  252 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 758
            A +  VKL+L+GDSGVGKSC++LRF  G F P+   T+G  F  +TI L+    +K +IWDTAGQER+  +   YYRG       YD+T   SF   + W++ +++H S  +   L+GNK D+ EK+ V +  G   A++ G+ F+ETSAK + N+ + F  +AK + +
Sbjct:   11 AYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKR-IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKK 178          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB6A_PONAB (Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 69/164 (42.07%), Postives = 104/164 (63.41%), Query Frame = 3
Query:  264 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR+V  ++G   A++  + FIETSAK   N+ QLF  +A  LP
Sbjct:   13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 175          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB6A_HUMAN (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 69/164 (42.07%), Postives = 104/164 (63.41%), Query Frame = 3
Query:  264 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR+V  ++G   A++  + FIETSAK   N+ QLF  +A  LP
Sbjct:   13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 175          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB6A_CHICK (Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 72/175 (41.14%), Postives = 108/175 (61.71%), Query Frame = 3
Query:  234 NAGSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            +AG      LR  KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T ++ ++WDTAGQER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR+V  ++G   A++  + FIETSAK   N+ QLF  +A  LP
Sbjct:    2 SAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-IRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 175          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 68/165 (41.21%), Postives = 102/165 (61.82%), Query Frame = 3
Query:  258 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            N   K+VL+G+SGVGK+ ++ RF R +F   S+ T+G  F ++T+ L  +  VK +IWDTAG ERY A+   YYRG       +D+T   ++   + W+KEL  H    IV+ LVGNK+DL + REVP ++   +AE NG+ F+ETSA  + N+   F+ + K +
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEI 173          
The following BLAST results are available for this feature:
BLAST of DY258207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB6A_MOUSE2.904e-3341.71Ras-related protein Rab-6A OS=Mus musculus GN=Rab6... [more]
RAB2B_HUMAN2.904e-3339.26Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB25_BOVIN2.904e-3341.21Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
YPTV4_VOLCA3.793e-3338.51GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE3.793e-3338.51GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB8B_DICDI3.793e-3340.83Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB6A_PONAB3.793e-3342.07Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6... [more]
RAB6A_HUMAN3.793e-3342.07Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
RAB6A_CHICK3.793e-3341.14Ras-related protein Rab-6A OS=Gallus gallus GN=RAB... [more]
RAB25_MOUSE3.793e-3341.21Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258207 ID=DY258207; Name=DY258207; organism=Citrus clementina; type=EST; length=1033bp
GCGGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAA
TCAGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAA
TTACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATAT
TTATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGT
TCTGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGA
TGCAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTG
GGAAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACC
TCCAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCA
AGATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAA
GATATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTT
GTTGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTG
GGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAG
TTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGAT
GGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGC
CAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGAC
TTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTG
CTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGA
CTTGTGTATATTGTGATATATGATGTGGGTCCCCTGTTTCATTTTGCAAC
TGCATTATGATTTATGATTCTCACTTGGGAAACTTTCTGTGGCAAACTTA
AATCCTAAGGGGGGATATAAACCATTTAAACGCCGCAATGGAGGCACCAA
GAATTTGAATTAAAATATTTAACCCTTTTACCC
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