DY258211

Overview
NameDY258211
Unique NameDY258211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1057 contig Ccv1_Contig1057:1..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258211 vs. ExPASy Swiss-Prot
Match: PGRC1_CHICK (Membrane-associated progesterone receptor component 1 OS=Gallus gallus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.955e-18
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  322 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDK 654
            + T  +LR YDG  DP   +LMA+ G+++DV+R+  FYGP GPY +FAGRDASR LA    D + L  + + LSD   ++ E L+DWE +F  KY  VG+++ +   +PT   D+
Sbjct:   70 DFTLEQLRPYDGVRDPR--ILMAVNGKVFDVTRASKFYGPDGPYGIFAGRDASRGLATFCLDKEALRDDYDDLSDLNATQQETLRDWESQFTFKYHHVGKLLKD-GEEPTVYSDE 181          
BLAST of DY258211 vs. ExPASy Swiss-Prot
Match: PGRC2_HUMAN (Membrane-associated progesterone receptor component 2 OS=Homo sapiens GN=PGRMC2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.315e-17
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 1
Query:  337 ELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIV--SEQTSKPTKNGDKVPENQ 669
            +LR YDGS  N  +L+A+ G+++DV++   FYGP GPY +FAGRDASR LA    D   L    + LSD    ++E +++WE +F EKY  VG+++   E+ S+ T   D    N+
Sbjct:  107 QLRQYDGSR-NPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGEEPSEYTDEEDTKDHNK 221          
BLAST of DY258211 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.948e-17
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  328 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQD-WEYKFMEKYVKVG----QIVSEQTSKPTKNGDKVPENQNH 675
            TE EL  Y G + ++P+ +A+KG ++DV+  + FYG G PY   AG+D+SR +A MS DP DLT +  GL+  ELE L D +   +  KY  VG    +I++E  S    N D  PE+Q H
Sbjct:   47 TEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILNEDGS---PNLDFKPEDQPH 164          
BLAST of DY258211 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.559e-16
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  328 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQD-WEYKFMEKYVKVG----QIVSEQTSKPTKNGDKVPENQNH 675
            TE EL  Y G + ++P+ MA+KG ++DV+  + FYG G PY    G+D++R +A MS DP DLT +  GL+  ELE L D +   +  KY  VG    +I++E  S    N D  PE+Q H
Sbjct:   45 TEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVGYTARRILNEDGS---PNLDFKPEDQPH 162          
BLAST of DY258211 vs. ExPASy Swiss-Prot
Match: PGRC2_RAT (Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  337 ELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIV--SEQTSKPTKNGD 651
            +LR YDG+   + +L+A+ G+++DV++   FYGP GPY +FAGRDASR LA    D   L    + LSD    ++E +++WE +F EKY  VG+++   E+ S+ T   D
Sbjct:  101 QLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGEEPSEYTDEED 209          
BLAST of DY258211 vs. ExPASy Swiss-Prot
Match: PGRC2_MOUSE (Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  337 ELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIV--SEQTSKPTKNGD 651
            +LR YDG+   + +L+A+ G+++DV++   FYGP GPY +FAGRDASR LA    D   L    + LSD    ++E +++WE +F EKY  VG+++   E+ S+ T   D
Sbjct:  101 QLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGEEPSEYTDEED 209          
BLAST of DY258211 vs. ExPASy Swiss-Prot
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe GN=dap1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.701e-16
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  301 PETVQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQ-------DLTGNIEGLSDSELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQNHD 678
            P+  +  + T  EL+ Y+GS  N  + +AIKG +Y+V+    FYGP GPY+ FAG DASR LA  SFD +       +   +   L+D E + L DW+  F +KY  VG+++S + ++      +  E   H+
Sbjct:   35 PKQPEWRDYTPAELKEYNGSK-NSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLISPREARAAATISETEEKVAHN 166          
BLAST of DY258211 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.446e-16
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  328 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYK-FMEKYVKVG----QIVSEQTSKPTKNGDKVPENQNH 675
            TE EL  Y G + ++P+ +A+KG ++DV+  + FYG G PY    G+D++R +A MS DP DLT +  GL+  ELE L +   K +  KY  VG    +I++E  S    N D  PE+Q H
Sbjct:   48 TEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVGYTARRILNEDGS---PNLDFKPEDQPH 165          
BLAST of DY258211 vs. ExPASy Swiss-Prot
Match: CB5D2_DANRE (Cytochrome b5 domain-containing protein 2 OS=Danio rerio GN=cyb5d2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  325 VTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYVKVGQIVSE---QTSKPT 639
            +T+ +L  Y+G   +K L +AI GQ++DV + R  YGPGG Y  F G+DASRA     F    L+ ++   S+S++  L DW   +   Y  VG+++     +T +PT
Sbjct:   54 LTKEQLSLYNGGKNSKGLYLAILGQVFDVEKGRKHYGPGGGYHFFTGKDASRAFITGDFTEAGLSNDVSDFSESQIVALYDWLSFYQRDYTPVGKLIGRFYTETGQPT 161          
BLAST of DY258211 vs. ExPASy Swiss-Prot
Match: DAP1_YEAST (Damage response protein 1 OS=Saccharomyces cerevisiae GN=DAP1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  304 ETVQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFD---PQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSE 621
            E V  G      L  ++G D  K + +AI+G++YD +R R FYGP GPY  FAG DASR LAL SFD    +D    I+ L D    +++ L +W+  F  KY  +G ++ E
Sbjct:   37 EPVVAGNFFPRTLSKFNGHDDEK-IFIAIRGKVYDCTRGRQFYGPSGPYTNFAGHDASRGLALNSFDLDVIKDWDQPIDPLDDLTKEQIDALDEWQEHFENKYPCIGTLIPE 147          
The following BLAST results are available for this feature:
BLAST of DY258211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PGRC1_CHICK7.955e-1843.48Membrane-associated progesterone receptor componen... [more]
PGRC2_HUMAN2.315e-1741.38Membrane-associated progesterone receptor componen... [more]
NENF_MOUSE3.948e-1742.15Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
NENF_BOVIN2.559e-1641.32Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
PGRC2_RAT3.342e-1640.91Membrane-associated progesterone receptor componen... [more]
PGRC2_MOUSE3.342e-1640.91Membrane-associated progesterone receptor componen... [more]
DAP1_SCHPO5.701e-1635.34Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more]
NENF_HUMAN7.446e-1640.50Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
CB5D2_DANRE6.303e-1536.11Cytochrome b5 domain-containing protein 2 OS=Danio... [more]
DAP1_YEAST8.233e-1540.18Damage response protein 1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258211 ID=DY258211; Name=DY258211; organism=Citrus clementina; type=EST; length=881bp
GCGGGGGAGCTTTGTTCTTCTTTTAAAATTAAATTAAAGAAAAAGAAGAC
CCAAATTAATTAAGAAGCTTACACAATGGTGGCGTTTTTCGCAGCGGTGA
TGGACACGGTCACCACCTACACCGGACTATCACCGGCGGCTTTCTTCACA
ATCCTGGCCCTTATGTGCGTGGTTTATAAAACGGTTTGTAGCATGTTCGT
TGACCCAGAGCCGCCAGAAGACTTGAAGAACAAGCTCATCAGCTCCAGCG
CCGCGGCGTCGGCGGCGACGGCGGCTAACTTTTCGAACCAAACGGTGATC
CCCGAAACGGTGCAGCTAGGAGAAGTCACTGAACATGAGTTGAGAGCTTA
TGATGGTTCTGACCCTAATAAGCCTCTTTTGATGGCTATCAAGGGACAAA
TCTACGACGTCTCTCGCTCCAGGATGTTCTATGGACCTGGAGGGCCATAT
GCAATGTTTGCTGGAAGGGACGCCAGTAGAGCCTTAGCTCTTATGTCTTT
TGACCCTCAAGACCTAACTGGGAATATTGAAGGCCTTAGTGATTCTGAGC
TTGAAGTTCTGCAAGATTGGGAATATAAATTCATGGAAAAATATGTCAAA
GTTGGCCAGATTGTCTCGGAACAAACAAGCAAACCCACCAAGAATGGAGA
TAAAGTACCTGAGAATCAAAACCACGACGGTGCCTAAGCACAATAGAAGT
TATATTTATTGGTGTACTCAGCAAAACAAAGACGGTGCAGAAACACAATA
GAAGTTATATTTATTTTTGTACTCTTCAAATGGTTACTTTTCTGCTTCCT
TCCATTGCTTATGTATCTTAGTTCACTCCTCTTTTCTCCTCTTGTATAAT
CTTTTGCCTTCTATAAATCACATTTAGCCTG
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