DY258220

Overview
NameDY258220
Unique NameDY258220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258220_ssr464 microsatellite DY258220_ssr464:464..475. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2562 contig Ccv1_Contig2562:222..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258220 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.538e-21
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  123 PVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 413
            P+T+  A++CG V+  +APCI +L       P  CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C+ V+
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of DY258220 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.383e-21
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  138 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 410
            ++CG V   +A CI +LR  G  P   CC+GV++L  +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of DY258220 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.643e-21
Identity = 51/94 (54.26%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  135 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 413
            AI+  QV +SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  I   VAAGLP QC V IPYKISPS DC RV+
Sbjct:   27 AISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of DY258220 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.259e-20
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  135 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 410
            AITCGQV+++L PC  + +  G  P   CCSGV+ L G AR+T D+QA C CLK   G     +   AAG+PS+CGV +PY IS S DCS++
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of DY258220 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.259e-20
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  123 PVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 413
            P+T+  A++CG V+  +APCI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of DY258220 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.148e-20
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  135 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 413
            A++CG V+ +LA CI +L   G  P   CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C+ V+
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of DY258220 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.806e-20
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  135 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 413
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of DY258220 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.806e-20
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  135 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 413
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of DY258220 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.786e-20
Identity = 49/93 (52.69%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  135 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 413
            A++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of DY258220 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.250e-20
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  123 PVT--NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV----AAGLPSQCGVRIPYKISPSTDCSRVR 413
            P+T   A+TCG V +++APCI ++  GG  P   CC+GV  LN  ARTTPDRQ AC CL+ A    R + PN+    AAG+P  CGV +P+ IS +T+C+ V+
Sbjct:   20 PITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETA---ARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
The following BLAST results are available for this feature:
BLAST of DY258220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTPD_BRAOT2.538e-2151.52Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP3_VITSX7.383e-2151.65Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP6_GOSHI9.643e-2154.26Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP8_HORVU1.259e-2050.00Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP2_BRANA1.259e-2051.52Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP3_BRANA2.148e-2053.76Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP_AMACA2.806e-2048.94Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP2.806e-2048.94Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPB_BRAOT4.786e-2052.69Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTPA_BRAOT6.250e-2047.57Non-specific lipid-transfer protein A OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258220 ID=DY258220; Name=DY258220; organism=Citrus clementina; type=EST; length=634bp
GACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAAAAG
CCTCCCTGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCT
TTTGTGCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCGGGC
AGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGG
CGTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGC
CGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAG
CTTACGGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCT
AGTCAATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTG
CTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATG
ATTGACTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTG
TCCGAACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTA
TATTTGCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGA
GTGATTAATTATAGTTATTTTGTGGTATTATCTT
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