DY258225

Overview
NameDY258225
Unique NameDY258225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1328
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258225 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.433e-11
Identity = 66/234 (28.21%), Postives = 97/234 (41.45%), Query Frame = 2 
Query:  374 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAAYYLGITDGEPNLVAEIGTLLKNINL-TPGFS 1072
            TFD +A   + K   ME ++ F+++ E +  VG    +G LL GPPGTGK+ L  A+A       F +                 +G+  + +   +  S      +   EN              R+  T   GG  +   TL+ LL  +DG   + G   I+V  TN  + LD ALLRPGR D  + +      G   +   + G      N   E G  L+ I + TPGFS
Sbjct:  218 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-----------------SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG--VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSG------NKKFESGVSLEVIAMRTPGFS 425
[Close]
BLAST of DY258225 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.876e-11
Identity = 63/233 (27.04%), Postives = 96/233 (41.20%), Query Frame = 2 
Query:  374 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCGPYGFRLLAAYYLGITDGEPNLVAEIGTLLKNINLTPGFS 1072
            TFD +A   + K   ME ++ F+++ E +  VG    +G LL GPPGTGK+ L  A+A       F +                 +G+  + +   +  S      +   EN              R+  T   GG  +   TL+ LL  +DG   + G   I+V  TN  + LD ALLRPGR D  + +      G   +   + G    + ++  EI  +      TPGFS
Sbjct:  225 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSI-----------------SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG--VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAM-----RTPGFS 432
The following BLAST results are available for this feature:
BLAST of DY258225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
FTSH8_ARATH4.433e-1128.21Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ARATH9.876e-1127.04Cell division protease ftsH homolog 2, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CF12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258225 ID=DY258225; Name=DY258225; organism=Citrus clementina; type=EST; length=1328bp
TAAGATCGGTCCCAGCATCGAAAGGCTCAAAATATGCAAAACTCCAAATG
AAAAAGTCATCACAATCCGCCTGGAAAAGAACGAACAGATTATTGATTCT
TTCCGAGGGGTACAGCTCAGATGGAGGTTTGCTCTTGTGGAGGCAGCCGA
CGGAAAGGGTAATTCCCATTCTATGAGGCCTGAGAAGCGACTATTTGAGC
TTACATTTCACCAGACTCACAAAGACATGGTCTTGAACTCTTACCTGCCA
CATGTAATCGAGCTAGCAAAGGATATGAAAGATAAGACAAGGGTTTTGAA
GATGTACACACTCCATAGGGTTCCAGATTATGATGCGATCCGGTGGGATT
CGGTCAAACTTGAGCATCCAGCAACCTTTGACACTTTGGCCATGGAACCA
GATCTTAAAGCTACTATCATGGAGGATCTCGATAGGTTTGTTAGGAGGAA
GGAGTTTTACAAGAGAGTTGGCAGAGCATGGAAACGTGGGTACTTGCTGT
ACGGACCTCCAGGCACTGGCAAATCAAGCTTGGTTGCAGCCATGGCCAAC
TATCTCAAGTTTGATGTCTTTGATTTGCAGCTCGGAAATGTTACCCGTGA
CTCCGATCTAAGGACTCTCCTGCTCAGTACTGGGAATAGATCAATCCTTG
TCATCGAAGACATTGATTGCAGTGTCGACTTGCCTGATCGCCGAAATGGA
AATGAAAATAATGCTGATGCTCAGCAGTCCAAGGCCGCGGGCGCAGCTGT
CCGCAAAAACAAGACCGACTTCGCTGGCGGAAAGGGACAGCATATGTTGA
CATTGTCGGGGCTGCTGAACTTCATTGATGGACTATGGTCCAGTTGTGGT
GACGAGAGGATTATCGTATTCACGACCAACCACAAGGAGAGGCTGGATCC
TGCTTTGCTGCGTCCAGGACGCATGGACATGCACATTCACATGTCATATT
GCGGCCCTTATGGGTTCAGGCTGTTAGCTGCCTATTACTTGGGCATTACC
GATGGTGAGCCCAACCTTGTGGCGGAAATTGGAACGTTACTAAAGAACAT
CAACCTAACTCCCGGCTTCAGTTCCGGAAAAAGTTTTATAAAAAACAAAA
AAGGCTTATGTTCCCGCTTTGCGCCCCTTTTTAAATTCCCCCAAACGGAA
AGGGGCGCAAGGGGGCGGGGGGAATGTTTGGTGGAAAAAAAAAAAAAAAA
AACAATATTTTGAGGACAAAATCCCCCTCTCCCCTCTCATCCCCCAAAAC
ACCCCAAAAAAGAGGAAGGATTAAAAATACCCCTTGGCAAAAAAAGGGGG
GAAAGAAAAAGAAAGAAGTGACCCGGCC
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