DY258227

Overview
NameDY258227
Unique NameDY258227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5063 contig Ccv1_Contig5063:334..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258227 vs. ExPASy Swiss-Prot
Match: RPIA_BACHK (Ribose-5-phosphate isomerase A OS=Bacillus thuringiensis subsp. konkukian GN=rpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 35/111 (31.53%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGV 333
            ++IVDESK+V  LG     +P+E++P+ WK T  ++Q L    GC   LR    + F+TDN N +                  +  + GVVE G+F++M +  I+ ++ G+
Sbjct:  113 IIIVDESKVVTRLGT--FPLPIEIIPFAWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIVDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGI 217          
BLAST of DY258227 vs. ExPASy Swiss-Prot
Match: RPIA_BACAN (Ribose-5-phosphate isomerase A OS=Bacillus anthracis GN=rpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 35/111 (31.53%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGV 333
            ++IVDESK+V  LG     +P+E++P+ WK T  ++Q L    GC   LR    + F+TDN N +                  +  + GVVE G+F++M +  I+ ++ G+
Sbjct:  113 IIIVDESKVVTRLGT--FPLPIEIIPFAWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIIDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGI 217          
BLAST of DY258227 vs. ExPASy Swiss-Prot
Match: RPIA_BACCZ (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ZK / E33L) GN=rpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 34/111 (30.63%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGV 333
            ++I+DESK+V  LG     +P+E++P+ WK T  ++Q L    GC   LR    + F+TDN N +                  +  + GVVE G+F++M +  I+ ++ G+
Sbjct:  113 IIIIDESKVVTRLGT--FPLPIEIIPFAWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIIDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGI 217          
BLAST of DY258227 vs. ExPASy Swiss-Prot
Match: RPIA_SYNJA (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE-QPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGV 333
            ++I D SK V HLG +   +PVEVV + WK T  R++ L    GC A LR T E  P++TD  +Y+             +A + +    GVVEHG+F+ MAT  I+A   G+
Sbjct:  119 IIIADASKKVAHLG-TRFPVPVEVVRFGWKTTLARVEAL----GCQAVLRRTAEGDPYLTDEQHYILDCQFGPIANPAKLA-EQLKGTVGVVEHGLFIGMATEAIIAGPEGI 224          
BLAST of DY258227 vs. ExPASy Swiss-Prot
Match: RPIA_SPHAL (Ribose-5-phosphate isomerase A OS=Sphingopyxis alaskensis GN=rpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 VVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVXXXXXXXXXXXXXVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRN 345
            ++I D SKLV  LG     +PVEVVP+  +F   RL  L    G    +R  G  PF+TD GNY+             +A+  I  + GV+EHG+FLD   T+++A    V +R+
Sbjct:  117 IIIADSSKLVAQLGK--FPLPVEVVPFATEFVRARLSAL----GARVTVREAGGTPFLTDQGNYILDAALDEIPRPREIAAA-ITTIPGVLEHGLFLDEIDTIMIARGDMVEVRH 224          
The following BLAST results are available for this feature:
BLAST of DY258227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RPIA_BACHK1.518e-1131.53Ribose-5-phosphate isomerase A OS=Bacillus thuring... [more]
RPIA_BACAN1.518e-1131.53Ribose-5-phosphate isomerase A OS=Bacillus anthrac... [more]
RPIA_BACCZ1.982e-1130.63Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_SYNJA3.381e-1138.39Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_SPHAL5.767e-1136.52Ribose-5-phosphate isomerase A OS=Sphingopyxis ala... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CG04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258227 ID=DY258227; Name=DY258227; organism=Citrus clementina; type=EST; length=661bp
GTTGTTATTGTCGACGAGTCCAAGCTGGTGCCTCATCTCGGAGGGAGCGG
CCTGGCCATGCCCGTTGAAGTGGTGCCGTACTGTTGGAAGTTTACGGCCA
AGAGGCTTCAGGATTTGTTTGAGGATTGTGGCTGTGTTGCCAAGCTCAGA
ACCACCGGTGAGCAGCCGTTTGTCACCGATAATGGCAACTACGTTATTGA
TTTGTATTTGAAGAAAGACATTGACGATTTGAAAGTTGCAAGCGACAACA
TTTTGCGGCTTGCCGGTGTTGTTGAGCACGGGATGTTTCTTGATATGGCT
ACTACTGTGATTGTAGCAAGCGAACTCGGCGTTACAATTAGGAATAAATA
GTGATTTTTTTTAAAATTTTTAATTTTTAACGTGTCGAGTCTAATTCCCA
AGTGAATTTGGGCACATTGTCATTGTTATACAAACACAAAAAAGGGATTT
TTGGGTCCATTTTTTAAGAAACTGATGAATTCTCCTGTATTAGGAGGTAC
TTCCAAGTTTTGTTTGAGACAGGTATTAGAGGATTTTAGGCGATTCTGAA
GATAACTGAAGGATGAGTGAAGAATGGTGTATCACAGTTATCATTTTCTT
TTCAATAGTTATTTCCATGTTATATTTATTAACGCTTTGGAATTGACTTG
GTCAGAATTGA
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