DY258233

Overview
NameDY258233
Unique NameDY258233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258233_ssr734 microsatellite DY258233_ssr734:734..748. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1059 contig Ccv1_Contig1059:1..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.692e-11
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  222 YGLIAKATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 515
            +G  + +    T++  V  + +K+E+ +   +    K   YRG+R+RPWGK+AAEIRD  R G+RVWLGTF++              +RG  A LNFP
Sbjct:   40 WGFYSTSKLHPTNQVNVKEEAVKKEQATEPGKRRKRKNV-YRGIRKRPWGKWAAEIRD-PRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.431e-11
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 3
Query:  270 VSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVT 626
            V S+      VS+TT    T EK +RGVR+RPWGK+AAEIRD  +  +R+WLGT+++              +RG  A+ NF V     + K          SPV   K+K++  +K VT
Sbjct:  100 VKSESTVSPVVSATT--TTTGEKKFRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEK-----KAPPPSPVKKKKKKNNKSKKSVT 210          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.399e-11
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  261 EALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 515
            + L++   + +E  SS + E P   K YRGVR+RPWGK+AAEIRD  +   RVWLGTF++               RGS A LNFP
Sbjct:   37 QPLITGSAVTKECESSMSLERP---KKYRGVRQRPWGKWAAEIRDPHK-ATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.399e-11
Identity = 37/81 (45.68%), Postives = 43/81 (53.09%), Query Frame = 3
Query:  273 SSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 515
            SS   K+ E      +   K+  YRGVR+RPWGKFAAEIRD  R   RVWLGTF++               RG  A LNFP
Sbjct:  113 SSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKR-ATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
The following BLAST results are available for this feature:
BLAST of DY258233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RAP23_ARATH1.692e-1137.76Ethylene-responsive transcription factor RAP2-3 OS... [more]
CRF2_ARATH6.431e-1136.97Ethylene-responsive transcription factor CRF2 OS=A... [more]
RAP26_ARATH8.399e-1144.71Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF109_ARATH8.399e-1145.68Ethylene-responsive transcription factor ERF109 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258233 ID=DY258233; Name=DY258233; organism=Citrus clementina; type=EST; length=974bp
CGGGGACTGAACTACGCAACACAACTAGGGAAAAAACAGAGTGAAAAACA
GAGTCTCAGAACCTGAACACACACTCTCATCAAATCCTAATGGATTCCTT
GTTCTTCCACTCTCCAAATTCAATTTCCTCATCGGAATCCTCTTTCGGGT
CACCGGAGTCTTTCCCTTTTTATAACAATTATCTTCCATTCAATGAAAAT
GACTCAAAAGAAATGCTTCTCTATGGACTAATAGCAAAAGCCACACCGGA
AGCAACATCAGAAGCACTAGTAAGCTCCAAGAGAATTAAAGAAGAAGAGG
TGAGTTCAACAACAGAGGAAAACCCCACCAAGGAAAAGTCATATAGAGGC
GTTCGACGGCGGCCGTGGGGGAAATTTGCAGCAGAAATAAGAGATTCAAC
TAGGCATGGGATTAGGGTTTGGCTAGGGACATTCGATAGTGCTGAAGCAG
CTGCTTTGGCTTACGATCAAGCTGCTTTCTCAATGAGGGGCTCTTCAGCT
ATACTCAATTTTCCCGTTGAAAGGGTTCAAGAATCACTTAAAGACATGAA
GTGTAACACCGAGGAGGGATGCTCACCTGTGGTTGCACTAAAGAGGAAAC
ATTCTATGAGAAGAAAAATGGTGACTAATAATAAGAAGCATAAAGAGAGA
GATAATTTGAGGATTGAAAATTTTGTGGTGTTGGAAGATTTAGGAGCAGA
TTACTTGGAAGAGCTGCTAAGTTCATCTGAAAGTACTACTACTACTACAG
CAAGACCTCGCTAATTGGTGAATTAGATAATAAGTCAACTACTTGTAACT
TTCTGGCCTTATCTTAATCTTCTTGCCCTTTTTTTTTTAATTTAGTTATT
GTCGTTATCTTCTTTTTTCATATGTAAACCAAAGACGGTTTATGCCTGTA
CAAGCTTCCATTTTTTGAAAGCAATTCGGGGGTGATCCTGTATCTAGTTT
CTTTTATTTAATACGAAGTTAAAT
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