DY258235

Overview
NameDY258235
Unique NameDY258235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:51..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC5_HUMAN (Chloride intracellular channel protein 5 OS=Homo sapiens GN=CLIC5 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 8.713e-13
Identity = 56/219 (25.57%), Postives = 101/219 (46.12%), Query Frame = 1
Query:   67 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 654
            + + VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + LK LD++L T                    F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F  T A
Sbjct:  175 IYLFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 391          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC5_BOVIN (Chloride intracellular channel protein 5 OS=Bos taurus GN=CLIC5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.941e-12
Identity = 57/224 (25.45%), Postives = 100/224 (44.64%), Query Frame = 1
Query:   55 AKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT-----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 654
            A   + + VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP  +  +  E  + G  IF  F  ++K+  +  N   E+ L + LK LD++L T                     F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y K  +A + F  T A
Sbjct:  197 ASPEINLFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPRLAAKH-RESNTAGIDIFVKFSAYIKNTKQQSNAALERGLTKALKKLDDYLNTPLPEEIDADTRGDDEKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDFPAEMTGLWRYLKNAYARDEFTNTCA 418          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: CLIC3_MOUSE (Chloride intracellular channel protein 3 OS=Mus musculus GN=Clic3 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.535e-12
Identity = 59/236 (25.00%), Postives = 99/236 (41.95%), Query Frame = 1
Query:   67 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASV----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDE--------------HLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 696
            +++ VKA+     + G CP  QR  + L  K VP+    ++         + +P  ++P++ +D     D+  I   +EE         PP+F S+          G+ IF  F  F+K+  P  ++   Q LL  L  LD               HL+     F+ G++ T  D SL PKL+ +     HF+Q  +P  L+ V  Y       + F+ T      ++A + P V+
Sbjct:    7 LQLFVKASEDGESV-GHCPSCQRLFMVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETL------GPPDFPSLAPRYRESNTAGNDIFHKFSAFIKNPVPTQDNALYQQLLRALTRLDSYLRAPLDHELAQEPHLRESHRRFLDGDQFTLADCSLLPKLHIVDTVCAHFRQLPIPAELSCVRRYLDSALQKKEFKYTCPHSAEILAAYQPAVH 235          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 53/171 (30.99%), Postives = 83/171 (48.54%), Query Frame = 1
Query:  118 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVG--------SKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAH 597
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      V +S +    ++E YPE  L     +            SK+ P   +F++SK   D     +AL  E K L+E +  +   F+ G+  + VD    P    L+ ALE      + E LAH
Sbjct:   32 CPFAQRTLMVLKAKGIRHEVININLKNKPEWFFEKNPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVPPLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKS-FLGGDSPSMVDYLTWPWFQRLE-ALE------LKECLAH 194          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  118 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSL--TNPPEFA------SVGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 558
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      + +S +    ++E YPE  L   +P E A       + SK+     +F+++K   D  G ++ L +E   L+E +      F  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLMVLKAKGIRHEIININLKNKPEWFFEKNPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPSLVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWPWFQRLE-ALE 188          
BLAST of DY258235 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 46/158 (29.11%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  118 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSL--TNPPEFA------SVGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 558
            CPF+QR LL L  K + ++   IN+ +KP+WF + +P G VPV++    + + +S +    ++E YP   L   +P E A       + SK+ P  + F++ ++  D  G ++ L +E   L+E L      +  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLLVLNAKGIRHQVININLKNKPEWFFQKNPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWPWFERLE-ALE 188          
The following BLAST results are available for this feature:
BLAST of DY258235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CLIC5_HUMAN8.713e-1325.57Chloride intracellular channel protein 5 OS=Homo s... [more]
CLIC5_BOVIN1.941e-1225.45Chloride intracellular channel protein 5 OS=Bos ta... [more]
CLIC3_MOUSE2.535e-1225.00Chloride intracellular channel protein 3 OS=Mus mu... [more]
GSTO1_MOUSE1.643e-1130.99Glutathione S-transferase omega-1 OS=Mus musculus ... [more]
GSTO1_RAT6.244e-1129.75Glutathione S-transferase omega-1 OS=Rattus norveg... [more]
GSTO1_PIG6.244e-1129.11Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258235 ID=DY258235; Name=DY258235; organism=Citrus clementina; type=EST; length=955bp
GGTTGTCGGGTTTTCACTAACAGCAACATACACTCTCTCTGATCACTCAA
TTCCGCAAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCGCTC
CTGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTG
GAGGAAAAGAAAGTTCCATACAAGCGTCACCTCATCAATATCAGTGACAA
GCCTCAATGGTTTTTGGAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAA
AGTTTGATGACAAGTGGGTGGCTGACTCTGATGTGATTGTTAGAATTATT
GAGGAGAAGTATCCTGAGCCTTCTCTTACTAATCCTCCTGAATTTGCCTC
TGTTGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGG
ACCCAAATGATGGGACAGAGCAAGCTTTGCTGGAGGAATTGAAAGCATTG
GATGAGCATCTTAAGACTCATGGAGGTCCATTCATTGCTGGAGAGAAGGT
CACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCAGGTAG
CTCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCATGTC
CATGGGTACACGAAGAAGCTTTTTGCTCTGGAATCCTTTCAGAAGACTAA
GGCTGAAAAGCAATACGTGATTGCAGGATGGGTGCCGAAGGTCAATGCAT
GAACTGGTTCTAAGCTATGCGGTGTTTGAAATCTAGCTAATGAAATGCGA
GTAATGTATGTGTGAGACTTGGAGCATAATTAGAATGTTCACTGGGGGTT
TGTATCATCCAATAAAGGTGGCTACGATGATATTTGCTATTTGTTATAAT
GAAACCTCCTGGTTGGATGGTATTTACTCTTAGTTCCTGGATATCTCCTA
CGGGGTATAAAATGGGTTAAATCCCTTGGGATTTTGTCAAATCCCAGGTC
CCATT
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