DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.334e-23
Identity = 50/114 (43.86%), Postives = 79/114 (69.30%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNG 344
            +  R+ F+PEF+NR+D+ +VF  L+R ++  I +LQ+DR+ +R+A R+++++VTDAA+  L   G DP YG RP++R++Q  + + LAK IL GE KD DT+ +D    AF  G
Sbjct:  750 EVVRASFKPEFLNRLDDLVVFSALNRQELERIAKLQIDRLAQRLAQRRLRLEVTDAALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAKEILAGEVKDGDTVRVD----AFGEG 859          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.048e-23
Identity = 48/107 (44.86%), Postives = 76/107 (71.03%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            +  ++ FRPEF+NR+D+ +VF PLD+ QI  I R+QL  ++KR+A+ ++K+ + D A++LLG++G+DP YG RP+KR IQ  +EN LA+ IL   F   DT+ +  +
Sbjct:  746 EVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLQGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQILAEAFVSGDTVQVGVD 852          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.981e-23
Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            D     FRPEF+NRVDE +VF PL ++ I SI  +QL R+++R+A+R  +++V D A+ L+  +G+DP YG RP+KR IQQ VEN LAK IL G+F     I++  +
Sbjct:  743 DVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSVK 849          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.981e-23
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 338
            DA RS FRPEF+NRVD+ I+F  L R ++S I+R+QL RV+  + D+K+  +++ AA   L   GYDP YG RP+KR IQ+ +EN LA  IL   F   DTI ID +    S
Sbjct:  753 DALRSHFRPEFLNRVDDTILFHALSRSEMSHIIRIQLKRVESLLRDQKISFEISPAACDFLVEKGYDPVYGARPLKRAIQREIENPLATKILENTFISGDTIYIDQDENGLS 864          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEF---KDEDTIVIDTEVTA 332
            D     FRPEF+NRVDE +VF PL ++ I SI  +QL+R+ KR+ ++  +++V+D A+ L+  +G+DP YG RP+KR IQQ VEN LAK IL GE    K    IV + ++ A
Sbjct:  743 DVVSKHFRPEFLNRVDEIVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSDKALDLIAQVGFDPVYGARPLKRAIQQNVENPLAKSILAGEIVPDKKVQLIVTNDQILA 855          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 50/111 (45.05%), Postives = 75/111 (67.57%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 335
            DA ++ F PEF+NR+D+ ++F PL + QI  IV+LQL+ ++ R+A   +  ++TDAAI  +  +GYDP YG RP+KRVIQ+ V+N LA  IL+  + +  TI ID +   F
Sbjct:  767 DALKARFLPEFLNRIDDTVIFHPLQQTQIRRIVQLQLEELRSRLAANGLSFEITDAAIDQIAEVGYDPAYGARPLKRVIQREVQNPLASAILKNSYAEGTTIKIDHDGDQF 877          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFR 374
            DA  + FRPEF+NR+DE I+F  L R+++  IV LQ++R+++R+ DRK+ ++++D A   L + GYDP YG RP+KR IQ+ +E  +AK IL G + D   + +D +V         Q++L FR
Sbjct:  750 DALHAHFRPEFLNRLDETIIFHSLRREELRQIVALQVNRLRERLCDRKLGLEISDTAADWLANAGYDPVYGARPLKRAIQRELETPIAKSILAGLYGDSQIVHVDVDV--------DQERLSFR 865          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.790e-23
Identity = 47/96 (48.96%), Postives = 75/96 (78.12%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEF 290
            DA  + FRPEF+NR+DE +VF+PL R+QI+ I  +QL R++KR+A+R++ ++++  A+  L ++G+DP YG RP+KR IQ+++EN LA+ IL G+F
Sbjct:  741 DAVNAHFRPEFINRIDEVVVFEPLAREQIAGIAEIQLGRLRKRLAERELSLELSQEALDKLIAVGFDPVYGARPLKRAIQRWIENPLAQLILAGKF 836          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.868e-23
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS-NGQLPQ 356
            R  FRPEF+NRVDE I+F  L R ++  IV +Q  R+QK + DRK+ + +  AA   L + G+DP YG RP+KRVIQ+Y+++ LA+ IL G+ KD D + I +E    + NG+ PQ
Sbjct:  747 RGHFRPEFLNRVDEIILFHRLQRSEMGRIVEIQFARLQKLLTDRKIVLTLDGAARDWLAAKGWDPAYGARPLKRVIQRYLQDPLAEMILAGDVKDGDNVAISSEGNVLTFNGKAPQ 862          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.513e-22
Identity = 49/104 (47.12%), Postives = 74/104 (71.15%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 314
            +  R+ FRPEF+NRVDE I+F  L R ++ +IV +QL+R++K ++DRK+ +++ D A   L   GYDP YG RP+KR IQ+YV++ LA+ +L+GEF D   I +
Sbjct:  745 EVVRAAFRPEFLNRVDEIILFHRLRRSEMGAIVDIQLERLRKLLSDRKITLELEDDARVFLADRGYDPAYGARPLKRAIQKYVQDPLAEKVLQGEFPDGSVIKV 848          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB1_STRAW2.334e-2343.86Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]
CLPB_XYLFA3.048e-2344.86Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_VIBCH3.981e-2347.66Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB1_ANASP3.981e-2348.21Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB_VIBPA5.199e-2346.90Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB_RHOBA5.199e-2345.05Chaperone protein clpB OS=Rhodopirellula baltica G... [more]
CLPB_PROMM5.199e-2341.94Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_PSEAE6.790e-2348.96Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_BRAJA8.868e-2346.55Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB_RHIME1.513e-2247.12Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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