DY258239
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17 Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 3 Query: 12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317 + FRPEF+NR+DE IVF+ L +D++ I L L+ V RI + +++ VT+ Q L GY+P+YG RP++R + + +E+ LA+ +L G+ K D+ V+D Sbjct: 701 KQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVD 802
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17 Identity = 42/108 (38.89%), Postives = 71/108 (65.74%), Query Frame = 3 Query: 12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 335 ++ FRPEF+NRVD+ IVF L +D++ IV + ++++ +R++++ + + VTD A + + GYDP YG RP+ R IQ+ VE+ L++ IL G + +VID + F Sbjct: 694 KNSFRPEFLNRVDDIIVFHKLSKDELKEIVTMMVNKLTQRLSEQDINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNQIEGKEVVIDHDGDEF 801
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_FUSNN (Chaperone protein clpB OS=Fusobacterium nucleatum subsp. nucleatum GN=clpB PE=3 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17 Identity = 39/107 (36.45%), Postives = 67/107 (62.62%), Query Frame = 3 Query: 3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323 D ++ F+PEF+NR+DE I F+ LD I IV+L L ++ ++ + + ++ +D + L + YDP+YG RP++R IQ+ +E LAK IL E ++ ++ID + Sbjct: 742 DELKARFKPEFLNRIDEIITFKALDLPAIKEIVKLSLKDLENKLKPKHITLEFSDKMVDYLANNAYDPHYGARPLRRYIQREIETSLAKKILANEVHEKSNVLIDLD 848
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BLOFL (Chaperone protein clpB OS=Blochmannia floridanus GN=clpB PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 5.567e-17 Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 3 Query: 21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM-KMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323 FRPEF+NR+DE +VF PL + I +QL + R+ +R + +T+ A+ L +G+DP YG RP+KR+IQQY+EN L++ IL + +I ID + Sbjct: 751 FRPEFINRIDEIVVFHPLSIKHLIDIANIQLKYLYSRLEERGYPRTGITNKALLFLSKIGFDPIYGARPLKRIIQQYIENPLSQKILSDDLLPGRSITIDVQ 852
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17 Identity = 41/108 (37.96%), Postives = 70/108 (64.81%), Query Frame = 3 Query: 12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 335 ++ FRPEF+NRVD+ IVF L +D++ IV + ++++ R++++ + + VT+AA + + GYDP YG RP+ R IQ+ VE+ L++ IL G + + ID + F Sbjct: 694 KNAFRPEFLNRVDDIIVFHKLSKDELKQIVTMMVNKLTNRLSEQDINISVTEAAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNQIEGKEVKIDHDGKEF 801
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17 Identity = 40/102 (39.22%), Postives = 67/102 (65.69%), Query Frame = 3 Query: 12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317 + FRPEF+NR+DE IVF+ L +D++ I L L+ V RI + +++ VT+ + L GY+P+YG RP++R + + +E+ LA+ +L G+ K D+ V+D Sbjct: 701 KQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSPVVD 802
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17 Identity = 49/145 (33.79%), Postives = 81/145 (55.86%), Query Frame = 3 Query: 3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSSDASAADNQEAFSQTA 437 D + FRPEF+NR+D+ IVF L R++I +V L + RV ++ + M + +TDAA LL G+DP G RP++R IQ+ +E++L++ IL E + +D + +G+ P + VF T + D +A + +A Sbjct: 699 DELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEVGPGQVVTVDVDNW---DGEGPGEDAVFTFTGTRKPPAEPDLAKAGAHSA 840
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17 Identity = 49/145 (33.79%), Postives = 81/145 (55.86%), Query Frame = 3 Query: 3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSSDASAADNQEAFSQTA 437 D + FRPEF+NR+D+ IVF L R++I +V L + RV ++ + M + +TDAA LL G+DP G RP++R IQ+ +E++L++ IL E + +D + +G+ P + VF T + D +A + +A Sbjct: 699 DELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEVGPGQVVTVDVDNW---DGEGPGEDAVFTFTGTRKPPAEPDLAKAGAHSA 840
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_RICBR (Chaperone protein clpB OS=Rickettsia bellii (strain RML369-C) GN=clpB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17 Identity = 38/92 (41.30%), Postives = 66/92 (71.74%), Query Frame = 3 Query: 12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 287 + +F+PEF+NR+DE I+F L++ I IV++QL+ ++K ++ + + ++ + A+ L GYDP++G RP+KR+IQ+ ++N LAK IL GE Sbjct: 745 KMVFKPEFLNRLDEIILFHRLNQSNIHDIVKIQLEGLKKILSAQNIILEFDEPALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGE 836
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PROMP (Chaperone protein clpB OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17 Identity = 37/101 (36.63%), Postives = 66/101 (65.35%), Query Frame = 3 Query: 12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 314 + F+PEF+NR+DE I+FQ L+ +++ I +LQL +++ R+ + + Q+TD AI L +D +YG RP+KR+IQ+ +E ++A IL + ++ + I Sbjct: 750 KKFFKPEFLNRLDEIIIFQNLELNELKDIAKLQLKKLENRLIKKDLNFQITDEAIDHLVKNSFDNSYGARPLKRIIQKEIETKIANNILNNNYLNKKEVYI 850 The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bpback to top |