DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            +  FRPEF+NR+DE IVF+ L +D++  I  L L+ V  RI  + +++ VT+   Q L   GY+P+YG RP++R + + +E+ LA+ +L G+ K  D+ V+D
Sbjct:  701 KQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVD 802          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 42/108 (38.89%), Postives = 71/108 (65.74%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 335
            ++ FRPEF+NRVD+ IVF  L +D++  IV + ++++ +R++++ + + VTD A + +   GYDP YG RP+ R IQ+ VE+ L++ IL G   +   +VID +   F
Sbjct:  694 KNSFRPEFLNRVDDIIVFHKLSKDELKEIVTMMVNKLTQRLSEQDINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNQIEGKEVVIDHDGDEF 801          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_FUSNN (Chaperone protein clpB OS=Fusobacterium nucleatum subsp. nucleatum GN=clpB PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 39/107 (36.45%), Postives = 67/107 (62.62%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            D  ++ F+PEF+NR+DE I F+ LD   I  IV+L L  ++ ++  + + ++ +D  +  L +  YDP+YG RP++R IQ+ +E  LAK IL  E  ++  ++ID +
Sbjct:  742 DELKARFKPEFLNRIDEIITFKALDLPAIKEIVKLSLKDLENKLKPKHITLEFSDKMVDYLANNAYDPHYGARPLRRYIQREIETSLAKKILANEVHEKSNVLIDLD 848          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BLOFL (Chaperone protein clpB OS=Blochmannia floridanus GN=clpB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.567e-17
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKM-KMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            FRPEF+NR+DE +VF PL    +  I  +QL  +  R+ +R   +  +T+ A+  L  +G+DP YG RP+KR+IQQY+EN L++ IL  +     +I ID +
Sbjct:  751 FRPEFINRIDEIVVFHPLSIKHLIDIANIQLKYLYSRLEERGYPRTGITNKALLFLSKIGFDPIYGARPLKRIIQQYIENPLSQKILSDDLLPGRSITIDVQ 852          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 41/108 (37.96%), Postives = 70/108 (64.81%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 335
            ++ FRPEF+NRVD+ IVF  L +D++  IV + ++++  R++++ + + VT+AA + +   GYDP YG RP+ R IQ+ VE+ L++ IL G   +   + ID +   F
Sbjct:  694 KNAFRPEFLNRVDDIIVFHKLSKDELKQIVTMMVNKLTNRLSEQDINISVTEAAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNQIEGKEVKIDHDGKEF 801          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 40/102 (39.22%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            +  FRPEF+NR+DE IVF+ L +D++  I  L L+ V  RI  + +++ VT+   + L   GY+P+YG RP++R + + +E+ LA+ +L G+ K  D+ V+D
Sbjct:  701 KQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSPVVD 802          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 49/145 (33.79%), Postives = 81/145 (55.86%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSSDASAADNQEAFSQTA 437
            D  +  FRPEF+NR+D+ IVF  L R++I  +V L + RV  ++  + M + +TDAA  LL   G+DP  G RP++R IQ+ +E++L++ IL  E      + +D +     +G+ P +  VF    T    +  D  +A + +A
Sbjct:  699 DELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEVGPGQVVTVDVDNW---DGEGPGEDAVFTFTGTRKPPAEPDLAKAGAHSA 840          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 49/145 (33.79%), Postives = 81/145 (55.86%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSSDASAADNQEAFSQTA 437
            D  +  FRPEF+NR+D+ IVF  L R++I  +V L + RV  ++  + M + +TDAA  LL   G+DP  G RP++R IQ+ +E++L++ IL  E      + +D +     +G+ P +  VF    T    +  D  +A + +A
Sbjct:  699 DELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDAAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEVGPGQVVTVDVDNW---DGEGPGEDAVFTFTGTRKPPAEPDLAKAGAHSA 840          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_RICBR (Chaperone protein clpB OS=Rickettsia bellii (strain RML369-C) GN=clpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 38/92 (41.30%), Postives = 66/92 (71.74%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 287
            + +F+PEF+NR+DE I+F  L++  I  IV++QL+ ++K ++ + + ++  + A+  L   GYDP++G RP+KR+IQ+ ++N LAK IL GE
Sbjct:  745 KMVFKPEFLNRLDEIILFHRLNQSNIHDIVKIQLEGLKKILSAQNIILEFDEPALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGE 836          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PROMP (Chaperone protein clpB OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 37/101 (36.63%), Postives = 66/101 (65.35%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 314
            +  F+PEF+NR+DE I+FQ L+ +++  I +LQL +++ R+  + +  Q+TD AI  L    +D +YG RP+KR+IQ+ +E ++A  IL   + ++  + I
Sbjct:  750 KKFFKPEFLNRLDEIIIFQNLELNELKDIAKLQLKKLENRLIKKDLNFQITDEAIDHLVKNSFDNSYGARPLKRIIQKEIETKIANNILNNNYLNKKEVYI 850          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPC_PORYE1.913e-1740.20ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAHJ3.264e-1738.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_FUSNN3.264e-1736.45Chaperone protein clpB OS=Fusobacterium nucleatum ... [more]
CLPB_BLOFL5.567e-1741.18Chaperone protein clpB OS=Blochmannia floridanus G... [more]
CLPC_STAS17.271e-1737.96ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU7.271e-1739.22ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_MYCTU7.271e-1733.79Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO7.271e-1733.79Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_RICBR7.271e-1741.30Chaperone protein clpB OS=Rickettsia bellii (strai... [more]
CLPB_PROMP7.271e-1736.63Chaperone protein clpB OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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