DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_LACPL (Chaperone protein clpB OS=Lactobacillus plantarum GN=clpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.271e-17
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            +S F+PEF+NR+D+ I+F PL    I  IV   +DR+  R+ DR++ ++++D A + +   GY+P YG RP++R I  +VE  LAK I+ G    + T+ I+
Sbjct:  750 QSRFKPEFLNRIDDIIMFTPLQLGAIEEIVVKLIDRLSARLQDREITLKISDEAKKWIAKQGYEPAYGARPLRRFITNHVETPLAKEIIAGRVAPKSTVAIN 851          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_CHLTR (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia trachomatis GN=clpC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.240e-16
Identity = 41/144 (28.47%), Postives = 86/144 (59.72%), Query Frame = 3
Query:    6 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSSDASAADNQEAFSQTA 437
            A +   +PEF+NR+DE ++F+PL+++ +S I+ L+++++  R+ + +M + + D+ I  L + G+ P  G RP++RV++QY+E+ LA+ +L+   + E   +           +L ++++VF R + +  A A +   +   TA
Sbjct:  717 AVKKHLKPEFINRLDESVIFKPLEKEALSEIIHLEINKLGSRLQNYQMDLNIPDSVISFLVTKGHSPEMGARPLRRVVEQYLEDPLAEMLLKESCRQEARKL---------RARLTEERVVFEREEEAVSALAIEGDGSEPITA 851          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CHLPN (Chaperone protein clpB OS=Chlamydia pneumoniae GN=clpB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.240e-16
Identity = 46/122 (37.70%), Postives = 76/122 (62.30%), Query Frame = 3
Query:   27 PEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSS 392
            PEFMNR+DE + F PL ++ I  IV +Q+ R+ +R+  R++ +   D+ I  L   GYD  +G RP+KR+IQQ V   L+K +L+G+ K + +I    E+T      + ++ LVF++++T S
Sbjct:  755 PEFMNRIDEILPFVPLTKEDIVKIVGIQMRRIAQRLKARRINLSWDDSVILFLSEQGYDSAFGARPLKRLIQQKVVILLSKALLKGDIKPDTSI----ELT------MAKEVLVFKKVETPS 866          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 41/108 (37.96%), Postives = 69/108 (63.89%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 335
            ++ FRPEF+NRVD+ IVF  L +D++  IV + ++++  R++++ + + VTD A + +   GYDP YG RP+ R IQ+ VE+ L++ IL G   +   + ID +   F
Sbjct:  694 KNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNKIEGKEVTIDHDGKEF 801          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 41/108 (37.96%), Postives = 69/108 (63.89%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 335
            ++ FRPEF+NRVD+ IVF  L +D++  IV + ++++  R++++ + + VTD A + +   GYDP YG RP+ R IQ+ VE+ L++ IL G   +   + ID +   F
Sbjct:  694 KNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNKIEGKEVTIDHDGKEF 801          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CLOTE (Chaperone protein clpB OS=Clostridium tetani GN=clpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.116e-16
Identity = 39/105 (37.14%), Postives = 69/105 (65.71%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            +A +  F+PEF+NR+D+ I+F+PL   +I+ I+ + L  ++ R+ DR + + VT+ A +L+   GYD  YG RP+KR I+  +E ++AK I++G+  +   I +D
Sbjct:  750 NALKDRFKPEFLNRLDDIIMFKPLTNREITKIIDIFLQDIENRLKDRNITLIVTENAKELMAKEGYDAIYGARPLKRYIENILETKIAKQIIKGDIYEGCKIGVD 854          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CLOAB (Chaperone protein clpB OS=Clostridium acetobutylicum GN=clpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.116e-16
Identity = 34/99 (34.34%), Postives = 66/99 (66.67%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            F+PEF+NR+D+ I+F+PL  ++I  I+ + L+ ++ ++ ++ +K+ + + A +++   GYDP YG RP+KR I+  +E  +AK  + GE  + D + I+
Sbjct:  756 FKPEFLNRLDDIIMFKPLSINEIGKIIDIFLENIKSKLKEKNIKIDIAEEAKKIIAEEGYDPVYGARPLKRYIENTIETHIAKMFISGEISEGDILKIE 854          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_CHLMU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia muridarum GN=clpC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 42/144 (29.17%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    6 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSSDASAADNQEAFSQTA 437
            A +   +PEF+NR+DE ++F+PL+++ +S I+ L+++++  R+ + +M + + D+ +  L   G+ P  G RP++RV++QY+E+ LA+ +L+   + E   +           +L +++++F R D  S A A +     S TA
Sbjct:  734 AVKKHLKPEFINRLDESVIFKPLEKEALSEIIHLEINKLGSRLQNHQMALNIPDSVVSFLVDKGHSPEMGARPLRRVVEQYLEDPLAEMLLKESCRQEARKLC---------ARLIEERVIFEREDEIS-ALAVEGDGPASVTA 867          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PARUW (Chaperone protein clpB OS=Protochlamydia amoebophila (strain UWE25) GN=clpB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            FRPEF+NR+D+ + F PL    +  IV +QL+ + KR+ DR +++  T  A+  L   GYDP++G RP+KR IQQ V N+L+  IL G+      I ++ E
Sbjct:  754 FRPEFINRLDDILPFVPLREHDMEKIVVIQLNLLAKRLKDRDVELMWTPQALAHLAKEGYDPHFGARPLKRYIQQEVINQLSTAILEGKIPPHSHIKLELE 854          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CHLCV (Chaperone protein clpB OS=Chlamydophila caviae GN=clpB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 39/99 (39.39%), Postives = 65/99 (65.66%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTI 308
            +  F PEF+NR+D+ + F PL+ + I  IV +Q+ RV +R+ +R++ +   D+ I  L   GYD ++G RP+KR+IQQ V   L+K +L+G+ K + +I
Sbjct:  750 KKYFSPEFINRIDDILPFVPLNTEDIVKIVGIQMRRVAQRLLERRVTLTWDDSVILYLSEQGYDSSFGARPLKRLIQQKVVTLLSKALLKGDIKSDTSI 848          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_LACPL7.271e-1739.22Chaperone protein clpB OS=Lactobacillus plantarum ... [more]
CLPC_CHLTR1.240e-1628.47Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_CHLPN1.240e-1637.70Chaperone protein clpB OS=Chlamydia pneumoniae GN=... [more]
CLPC_STAES1.620e-1637.96ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ1.620e-1637.96ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_CLOTE2.116e-1637.14Chaperone protein clpB OS=Clostridium tetani GN=cl... [more]
CLPB_CLOAB2.116e-1634.34Chaperone protein clpB OS=Clostridium acetobutylic... [more]
CLPC_CHLMU2.763e-1629.17Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_PARUW2.763e-1641.58Chaperone protein clpB OS=Protochlamydia amoebophi... [more]
CLPB_CHLCV2.763e-1639.39Chaperone protein clpB OS=Chlamydophila caviae GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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