DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: HSP78_YEAST (Heat shock protein 78, mitochondrial OS=Saccharomyces cerevisiae GN=HSP78 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 40/116 (34.48%), Postives = 73/116 (62.93%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDT---IVIDTEVTAFSN 341
            +A +  + PEF+NR+D+ +VF  L +  + SIV +++  +Q R+A+++MK+ +TD A   L   GYD  YG RP+ R+I + + N +A  +L+G+ ++ +T   +V DT++    N
Sbjct:  683 EAMKRSYPPEFINRIDDILVFNRLSKKVLRSIVDIRIAEIQDRLAEKRMKIDLTDEAKDWLTDKGYDQLYGARPLNRLIHRQILNSMATFLLKGQIRNGETVRVVVKDTKLVVLPN 798          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_CHLPN (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 34/98 (34.69%), Postives = 68/98 (69.39%), Query Frame = 3
Query:    6 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDE 299
            A +   +PEF+NR+DE ++F+PL+++ +S I+ L+++++  R+ + +M + + D+ I  L + G+ P  G RP++RVI+QY+E+ LA+ +L+   + E
Sbjct:  715 AMKKHLKPEFINRLDESVIFRPLEKESLSEIIHLEINKLDSRLKNYQMALNIPDSVISFLVTKGHSPEMGARPLRRVIEQYLEDPLAELLLKESCRQE 812          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_LISIN (Chaperone protein clpB OS=Listeria innocua GN=clpB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 41/109 (37.61%), Postives = 68/109 (62.39%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 338
            +S F+PEF+NRVD+ I+F+PL    I  IV   ++ +Q R+AD+++ + ++D A   +    YDP YG RP+KR I ++VE  LA+ I+ G+     ++ ID +   F+
Sbjct:  753 QSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISDNAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKIMPHSSVEIDLQDKEFT 861          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 40/107 (37.38%), Postives = 66/107 (61.68%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            D  +  FRPEF+NR+D+ IVF  L RD+I  +V L + RV  ++  + M +++T+ A  LL   G+DP  G RP++R IQ+ +E++L++ IL  E      + +D +
Sbjct:  699 DELKKHFRPEFLNRIDDIIVFHQLSRDEIIRMVDLMISRVANQLKVKDMTLELTNKAKALLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEVGPGQVVTVDVD 805          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_WOLSU (Chaperone protein clpB OS=Wolinella succinogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 35/101 (34.65%), Postives = 67/101 (66.34%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            F+PEF+NR+D+ I+F PL   QI  IV +  + +++++ +R++ +++T +A + +  +G+DP YG RP+KR + + VE+ LA+ IL  +  +   +V D +
Sbjct:  749 FKPEFLNRLDDIIIFNPLGLAQIVEIVEIMFEGIREKLKERQITLELTQSAKEQIAEVGFDPVYGARPLKRALYEEVEDRLAELILEDKISEGSHVVFDAQ 849          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CHLTR (Chaperone protein clpB OS=Chlamydia trachomatis GN=clpB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 3
Query:    6 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFK 293
            A ++ F PEF+NR+D+ + F PL  + I  IV +Q++RV  R+ +RK+ +   D+ +  L   GYD  +G RP+KR+IQQ V   L+K +L+G+ K
Sbjct:  748 ALKNYFSPEFINRIDDILPFVPLTTEDIVKIVGIQMNRVALRLLERKISLTWDDSLVLFLSEQGYDSAFGARPLKRLIQQKVVTMLSKALLKGDIK 843          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CHLMU (Chaperone protein clpB OS=Chlamydia muridarum GN=clpB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 3
Query:    6 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFK 293
            A ++ F PEF+NR+DE + F PL  + I  IV +Q++RV  R+ +R++ +   D+ +  L   GYD  +G RP+KR+IQQ V   L+K +L+G+ K
Sbjct:  748 ALKNYFSPEFINRIDEILPFVPLTTEDIVKIVGIQMNRVALRLLERRISLTWDDSVVLFLSEQGYDGAFGARPLKRLIQQKVVTMLSKALLKGDIK 843          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 36/104 (34.62%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            +  FRPEF+NR+ E IVF+ L + ++  I  + L  V  R+ ++++++QVT+     +   GY+P+YG RP++R I + +E+ +A+ +L GE K+ D++++D +
Sbjct:  798 KQYFRPEFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVD 901          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: HSP78_CANAL (Heat shock protein 78, mitochondrial OS=Candida albicans GN=HSP78 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.039e-16
Identity = 34/104 (32.69%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            R  + PEF+NR+D+ +VF  L +  +  I+ ++L  +  R+ D+++ +Q+TD A  LL  +GYDP YG RP+ RV+++ + + LA  +++G+ ++ +T+ ++ +
Sbjct:  679 RHHYAPEFLNRIDDIVVFNRLSKTALKEILDIRLREIGDRLVDKRIILQLTDEAKTLLCDMGYDPTYGARPLNRVLRKKLLDPLAMRLIKGQVQENETVKVEVK 782          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.039e-16
Identity = 36/104 (34.62%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            +  FRPEF+NR+DE IVF+ L + ++  I  + L  V +R+  +++++QVT+     +   GY+P+YG RP++R I + +E+ +A+ +L  E K+ D++++D +
Sbjct:  795 KQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 898          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
HSP78_YEAST3.609e-1634.48Heat shock protein 78, mitochondrial OS=Saccharomy... [more]
CLPC_CHLPN3.609e-1634.69Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_LISIN4.713e-1637.61Chaperone protein clpB OS=Listeria innocua GN=clpB... [more]
CLPC_MYCLE6.155e-1637.38Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_WOLSU6.155e-1634.65Chaperone protein clpB OS=Wolinella succinogenes G... [more]
CLPB_CHLTR6.155e-1640.63Chaperone protein clpB OS=Chlamydia trachomatis GN... [more]
CLPB_CHLMU6.155e-1640.63Chaperone protein clpB OS=Chlamydia muridarum GN=c... [more]
CLPAA_SOLLC6.155e-1634.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
HSP78_CANAL8.039e-1632.69Heat shock protein 78, mitochondrial OS=Candida al... [more]
CLPC_PEA8.039e-1634.62ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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