DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_STAEQ (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.827e-14
Identity = 33/105 (31.43%), Postives = 66/105 (62.86%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            D+  + F+PE +NR+D+ ++F+PL  + +S IV   L ++  R+ D+ + ++VT+ A + LG   Y+P +G RP+KR +Q+ +E  +A+ +++    +   I +D
Sbjct:  749 DSLHAYFKPEILNRMDDIVLFKPLSVNDMSMIVDKILTQLNMRLLDQHISIEVTEEAKKWLGEEAYEPQFGARPLKRFVQRQIETPIARMMIKESLPEGTIIKVD 853          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_ENTFA (Chaperone protein clpB OS=Enterococcus faecalis GN=clpB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.283e-13
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 314
            F+PEF+NR+D+ I+F PL  D +  I+     ++  R+  +++ +++TD A   +   GY+P YG RP+KR I + VE  LAK I+ G    +  + I
Sbjct:  754 FKPEFLNRIDDTILFTPLSLDNVKGIIGKMTAQLAHRLEQQEIVLEITDEAKTWIAENGYEPAYGARPLKRFITREVETPLAKEIVSGRVMPKTKVTI 851          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.734e-13
Identity = 33/99 (33.33%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            F PEF+NR+D+ IVF  L ++ +  I+ + L  + + I +R + + +++ A   +   G+D  YG R ++R IQ+ +E+ ++  IL G  +D DTI +D
Sbjct:  706 FNPEFLNRIDDIIVFHTLSKEDLKDIINIMLKELNEAIKERNIVINLSEEAKNYIIDKGFDKKYGARSLRRAIQKEIEDYVSTEILFGNIEDGDTINVD 804          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGIL 278
            +  FRPEF+NR+DE IVF  L +  I  I  L + ++QKR+ ++++ ++V  +   LL   GYDP YG RP++R + + +E+ LA+  L
Sbjct:  732 KEFFRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVYGARPLRRAVMRLLEDTLAQQCL 820          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPE (Chaperone protein clpB OS=Mycoplasma penetrans GN=clpB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE-FKDEDTIV 311
            ++ F+PEF+NR+DE I F  +  +    I +  LD ++KR+ D   ++    + ++ +   GY   YG RP+ R IQ+ +EN + + IL+ E  KD  TI+
Sbjct:  592 KTSFKPEFLNRIDEIIKFNSITMEFAKEIAQKMLDDLEKRLKDNNYQITFDKSVVEYVAKNGYSKEYGARPINRFIQKTIENFITESILKNELIKDRSTII 692          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPE_LACLA (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. lactis GN=clpE PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.087e-12
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAK-GILRGEFKDEDTIVIDTEVTAFSNGQ 347
            F PEFMNR D  I F  L ++ +  IV L LD V ++I    + + VT AA + L  LGY+P  G RP++R IQ+ +E+ +A   I   E+K+    +ID ++   +  Q
Sbjct:  626 FSPEFMNRFDGIIEFSALSKENLLKIVDLMLDEVNEQIGRNDIHLSVTQAAKEKLVDLGYNPAMGARPLRRTIQENIEDSIADFYIEHPEYKELVADLIDDKIVISNQAQ 735          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIN (Chaperone protein clpB OS=Leptospira interrogans GN=clpB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.087e-12
Identity = 33/99 (33.33%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            F+PEF+NR+DE I+F  +    I  I  +QL+ ++++  +  + +  T+     +   G+D  YG RP+KR+IQ+ V N L++ IL G+F +   + +D
Sbjct:  752 FKPEFLNRIDEVILFHSITDSVIHKIADIQLEGLRQKAKENGLDVSFTNELKDYVSKAGFDAEYGARPLKRLIQREVGNALSRYILDGKFTNGQNVTVD 850          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIC (Chaperone protein clpB OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.087e-12
Identity = 33/99 (33.33%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            F+PEF+NR+DE I+F  +    I  I  +QL+ ++++  +  + +  T+     +   G+D  YG RP+KR+IQ+ V N L++ IL G+F +   + +D
Sbjct:  752 FKPEFLNRIDEVILFHSITDSVIHKIADIQLEGLRQKAKENGLDVSFTNELKDYVSKAGFDAEYGARPLKRLIQREVGNALSRYILDGKFTNGQNVTVD 850          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_LACLM (Chaperone protein clpB OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpB PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.087e-12
Identity = 30/101 (29.70%), Postives = 64/101 (63.37%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 314
            R+ F+PEF+NR+D+ I+F+PL  + I +I+     ++  R+ + ++++++++     +    Y+P YG RP+KR + + +EN LAK I+ G+   +  +++
Sbjct:  751 RAHFKPEFLNRIDDTILFKPLALEDIKNIILKMTSQLAHRLEEMEVELELSEEVKVWIAENAYEPAYGARPLKRYLTKVIENPLAKLIIGGKIPPKSKVIV 851          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPE_LACLM (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAK-GILRGEFKDEDTIVIDTEVTAFSNGQ 347
            F PEFMNR D  I F  L ++ +  IV L LD V ++I    + + VT AA + L  LGY+P  G RP++R+IQ+ +E+ +A   I   E+K     +ID ++   +  Q
Sbjct:  626 FSPEFMNRFDGIIEFSALSKENLLKIVDLMLDEVNEQIGRNDIHLSVTQAAKEKLVDLGYNPAMGARPLRRIIQENIEDSIADFYIEHPEYKQLVADLIDDKIVISNQTQ 735          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_STAEQ9.827e-1431.43Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_ENTFA1.283e-1335.71Chaperone protein clpB OS=Enterococcus faecalis GN... [more]
HLYB_TREHY3.734e-1333.33Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE... [more]
CLPC_ODOSI4.877e-1339.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_MYCPE4.877e-1333.66Chaperone protein clpB OS=Mycoplasma penetrans GN=... [more]
CLPE_LACLA1.087e-1237.27ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_LEPIN1.087e-1233.33Chaperone protein clpB OS=Leptospira interrogans G... [more]
CLPB_LEPIC1.087e-1233.33Chaperone protein clpB OS=Leptospira interrogans s... [more]
CLPB_LACLM1.087e-1229.70Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPE_LACLM1.419e-1237.27ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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