DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10087 contig Ccv1_Contig10087:4..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BIFLO (Chaperone protein clpB OS=Bifidobacterium longum GN=clpB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 47/122 (38.52%), Postives = 84/122 (68.85%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID------TEVTAFSNGQL 350
            DA    F+PEF+NR+D+ ++F PL R+++  IV +Q+  V +R+ DR++ + VTD+A + L + GYDP YG RP++R++Q  V ++LA+ +L G+  D DT+++D       E++A+++ Q+
Sbjct:  752 DAVHMNFKPEFLNRLDDIVMFHPLTREELGGIVDIQVAGVSQRLTDRRITLDVTDSAREWLANTGYDPAYGARPLRRLVQTEVGDQLARMLLAGKVHDGDTVLVDQTGGEHLELSAWASDQI 873          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 287
            FRPEF+NR+DE +VF PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL + GYDP YG RP+KR IQQ +EN LA+ IL GE
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 287
            FRPEF+NR+DE +VF PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL + GYDP YG RP+KR IQQ +EN LA+ IL GE
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22
Identity = 52/118 (44.07%), Postives = 76/118 (64.41%), Query Frame = 3
Query:    6 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQ 359
            A R  FRPEF+NR+D+ I+FQPL R Q+  IV +QL R+++ +A++ + + VT AA   L   GYDP YG RP+KR IQ+ +EN +A  IL  +F   D +++D +    + GQL  Q
Sbjct:  757 ALRQHFRPEFLNRIDDTILFQPLSRGQLQQIVDIQLQRLKRLLAEQAIALNVTPAAAANLADRGYDPVYGARPLKRAIQRLIENPVASLILEQQFDAGDALIVDVD----AEGQLQFQ 870          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_WOLPM (Chaperone protein clpB OS=Wolbachia pipientis wMel GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.672e-21
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 314
            +S FRPEF+NR+DE I+F  L RD I  I+ +Q   +QK +A RK+ + +   A +L+   GYDP YG RP+KRVIQ+ ++N LAK +L GE  + D +++
Sbjct:  741 KSAFRPEFLNRLDEIIIFHSLTRDDIYKIIDVQFSYLQKTLAKRKLSISLLQEAKELIAQTGYDPEYGARPLKRVIQECIQNNLAKLVLSGEVVENDELIV 841          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.672e-21
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRG 284
            FRPEF+NRVDE +VF PL +D I SI  +QL+R+  R+ +   +++V+D A++L+  +G+DP YG RP+KR IQQ +EN LAK IL G
Sbjct:  749 FRPEFLNRVDETVVFHPLSQDHIKSIAAIQLNRLANRMEEHGYQLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAG 836          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.672e-21
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 287
            FRPEF+NR+DE +VF PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL   GYDP YG RP+KR IQQ +EN LA+ IL GE
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.672e-21
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 287
            FRPEF+NR+DE +VF PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL   GYDP YG RP+KR IQQ +EN LA+ IL GE
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.672e-21
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 287
            FRPEF+NR+DE +VF PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL   GYDP YG RP+KR IQQ +EN LA+ IL GE
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.672e-21
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 287
            FRPEF+NR+DE +VF PL    I+SI ++QL R+ KR+ +R  ++ ++D A++LL   GYDP YG RP+KR IQQ +EN LA+ IL GE
Sbjct:  749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGE 837          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_BIFLO7.507e-2238.52Chaperone protein clpB OS=Bifidobacterium longum G... [more]
CLPB_SALTY9.804e-2252.81Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI9.804e-2252.81Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB2_SYNE79.804e-2244.07Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]
CLPB_WOLPM1.672e-2145.54Chaperone protein clpB OS=Wolbachia pipientis wMel... [more]
CLPB_VIBVY1.672e-2152.27Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_SHIFL1.672e-2152.81Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_ECOLI1.672e-2152.81Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL61.672e-2152.81Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]
CLPB_ECO571.672e-2152.81Chaperone protein clpB OS=Escherichia coli O157:H7... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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