DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10087 contig Ccv1_Contig10087:4..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.672e-21
Identity = 43/105 (40.95%), Postives = 76/105 (72.38%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            +A ++ FRPEF+NR+D+ I+F+ L+++++  IV LQ++R++ R+  RK+ +Q++D A   L ++G+DP YG RP+KR IQ+ +E  +AK IL G+  +  T+ +D
Sbjct:  749 EALKAKFRPEFLNRLDDQIIFRSLEKEELRRIVSLQVERLRSRLEQRKLDLQLSDIAADWLATIGFDPVYGARPLKRAIQRELETPIAKAILAGQLSEGQTVQVD 853          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_STRAL (Chaperone protein clpB OS=Streptomyces albus G GN=clpB PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.184e-21
Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            +  RS F+PEF+NR+D+ ++F  LD D+++ I  LQ+  + +R+ADR++ + VT  A+  L   G+DP YG RP++R+IQ  + + LAK IL GE +D DT+ +D
Sbjct:  740 EVVRSSFKPEFLNRLDDLVIFSALDEDELARIAGLQIAGLARRLADRRLSLDVTPEALAWLAKEGFDPAYGARPLRRLIQTAIGDRLAKEILAGEVRDGDTVRVD 844          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.184e-21
Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRL 380
            +A  S FRPEF+NR+DE I+F  L + Q+  IV++Q  R++ R+A RKM ++++DAA+  L   G+DP YG RP+KR IQ+ +E  +AK ILR  F + DTI +D   T         ++L F+RL
Sbjct:  751 EAMLSNFRPEFLNRIDEIIIFHSLQKAQLREIVKIQTHRLESRLA-RKMSLKLSDAALDFLAE-GFDPVYGARPLKRAIQRELETTIAKEILRSNFTEGDTIFVDVGET---------ERLEFKRL 865          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.184e-21
Identity = 46/99 (46.46%), Postives = 71/99 (71.72%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            FRPEF+NR+DE +VF  L ++QI +I  +Q+DR++KR+ ++  ++ ++D A+  L  LGYDP YG RP+KRV+QQ +EN L++ IL G+F     I I+
Sbjct:  750 FRPEFINRIDEAVVFHSLKKEQIRNIAIIQIDRIKKRLKEKDYQLTISDDALDYLSELGYDPVYGARPLKRVLQQQLENPLSQKILEGKFVPGSLINIE 848          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.184e-21
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            D  +  FRPEF+NR+DE +VF  L+   I SI R+QL R+ +R+  ++M++ V+DAA+  +   G+DP +G RP+KR IQQ +EN +AK IL G F   D + +D
Sbjct:  748 DELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLILEGVFGPRDVVPVD 852          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BORBR (Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.184e-21
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            D  +  FRPEF+NR+DE +VF  L+   I SI R+QL R+ +R+  ++M++ V+DAA+  +   G+DP +G RP+KR IQQ +EN +AK IL G F   D + +D
Sbjct:  748 DELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLILEGVFGPRDVVPVD 852          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            FRPEF+NR+DE +VF PL ++ I +I  +QL+R+ KR+  R  ++  TDA +  +G +GYDP YG RP+KR IQQ +EN LA+ IL G       + ID
Sbjct:  748 FRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTDALLDFIGEVGYDPIYGARPLKRAIQQEIENSLAQQILSGALLPGKVVTID 846          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BORPA (Chaperone protein clpB OS=Bordetella parapertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            D  +  FRPEF+NR+DE +VF  L+   I SI R+QL R+ +R+  ++M++ V+DAA+  +   G+DP +G RP+KR +QQ +EN +AK IL G F   D + +D
Sbjct:  748 DELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSGFDPVFGARPLKRAVQQQIENPVAKLILEGVFGPRDVVPVD 852          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB2_STRAW (Chaperone protein clpB 2 OS=Streptomyces avermitilis GN=clpB2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 45/104 (43.27%), Postives = 72/104 (69.23%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            R  FRPEF+NRVD+ ++F+PL   QI  IV LQ D +++R+A+R++ +++TDA  +++   GYDP YG RP++R I   VE  + + +LRG+ +D  T+ +D E
Sbjct:  756 RGHFRPEFLNRVDDIVLFKPLGERQIERIVELQFDELRQRLAERRITVELTDAGREVIAHQGYDPVYGARPLRRYISHEVETLVGRALLRGDVQDGATVRVDAE 859          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.726e-21
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRG 284
            FRPEF+NRVDE +VF PL +D I SI  +QL+R+  R+ +    ++V+D A++L+  +G+DP YG RP+KR IQQ +EN LAK IL G
Sbjct:  749 FRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLANRMEEHGYPLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAG 836          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB1_SYNPX1.672e-2140.95Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPB_STRAL2.184e-2142.86Chaperone protein clpB OS=Streptomyces albus G GN=... [more]
CLPB_PLEBO2.184e-2143.65Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB_COXBU2.184e-2146.46Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]
CLPB_BORPE2.184e-2144.76Chaperone protein clpB OS=Bordetella pertussis GN=... [more]
CLPB_BORBR2.184e-2144.76Chaperone protein clpB OS=Bordetella bronchiseptic... [more]
CLPB_HAEIN2.853e-2147.47Chaperone protein clpB OS=Haemophilus influenzae G... [more]
CLPB_BORPA2.853e-2143.81Chaperone protein clpB OS=Bordetella parapertussis... [more]
CLPB2_STRAW2.853e-2143.27Chaperone protein clpB 2 OS=Streptomyces avermitil... [more]
CLPB_VIBVU3.726e-2152.27Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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