DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10087 contig Ccv1_Contig10087:4..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.726e-21
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            FRPEF+NR+DE +VF PL R  +S+I  +QL R+ KR+ +R  ++ +T  A+++L   G+DP YG RP+KR IQQ +EN LA+ IL G+      + +D E
Sbjct:  749 FRPEFINRIDEAVVFHPLGRRHLSAIADIQLQRLYKRLEERGYQVTITQQALEILAEAGFDPVYGARPLKRAIQQEIENPLAQKILSGQLLPGKPVTLDVE 849          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CAUCR (Chaperone protein clpB OS=Caulobacter crescentus GN=clpB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.726e-21
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFR 374
            +  R  FRPEF+NR+DE I+F+ L R  +  IVR+QL RV+K +ADR+M + +   A+  L   GYDP YG RP+KRVIQ+ + + +AK +L GE +D   I +       ++GQL   K V +
Sbjct:  741 NTVRGHFRPEFLNRIDEIILFKRLSRHNMGDIVRIQLQRVEKLLADRRMALALDAEALNWLADKGYDPVYGARPLKRVIQKELVDPIAKKLLAGEIEDGGVIAV-----GVTDGQLSFGKAVLQ 859          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_SHEON (Chaperone protein clpB OS=Shewanella oneidensis GN=clpB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 42/89 (47.19%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 287
            FRPEF+NR+DE +VF PLD + I  I  +Q+  ++KR+A++   +++TD A+ L+  +G+DP YG RP+KR +QQ +EN LA+ +LRG+
Sbjct:  749 FRPEFLNRIDESVVFHPLDAENIKHIASIQIASLRKRLAEKDYTLEITDEALSLIAEIGFDPVYGARPLKRALQQEMENPLAQKLLRGD 837          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            FRPE +NR+DE +VF  LD+D I +I ++QL  ++KR+  + +++ V+DAA+ ++   G+DP YG RP+KR IQ  +EN LAK +L G +  E  I ++ +
Sbjct:  752 FRPEMINRIDEVVVFHGLDQDNIRNIAKIQLKGLEKRLEKQNLRLAVSDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIRVEAD 852          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 46/99 (46.46%), Postives = 69/99 (69.70%), Query Frame = 3
Query:   24 RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDT 320
            RPEF+NR+DE I+F PL   +I  IV LQ+  VQK +A+  +++++TDAA+  L  +GYDP +G RPVKR IQ+Y+ N+L+K +L  E      I++D+
Sbjct:  755 RPEFLNRIDETIMFLPLTETEIRQIVLLQIKGVQKMLAENGVELEMTDAALNFLSQVGYDPEFGARPVKRAIQRYLLNDLSKKLLSQEVDRSKAIIVDS 853          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 47/104 (45.19%), Postives = 75/104 (72.12%), Query Frame = 3
Query:    6 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            +A+  FRPEF+NR+D+ I+F  L R +++ I ++QL RV+K +AD+K+ +++T AA+  L ++G+DP YG RP+KR IQ+ +EN LA  +L   F   DTI++D
Sbjct:  759 SAQKYFRPEFLNRIDDVILFHGLGRTELAQIAQIQLRRVEKLLADQKIHLRLTPAALDHLVAVGFDPVYGARPLKRAIQRELENPLAVKLLEEVFTPGDTILVD 862          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 47/102 (46.08%), Postives = 70/102 (68.63%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            R  FRPEF+NR+D+ I+F  L RD++  IV LQ+ R++K + ++K+ + ++DAA+  + S GYDP YG RP+KR IQ+ +EN +A  IL   F   D I+ID
Sbjct:  762 RKHFRPEFLNRIDDLIIFHTLKRDELRRIVVLQIKRIEKLLDEQKITLSLSDAALDHIVSAGYDPTYGARPLKRAIQRQLENPIATKILENTFVAGDKILID 863          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CORDI (Chaperone protein clpB OS=Corynebacterium diphtheriae GN=clpB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.300e-21
Identity = 42/108 (38.89%), Postives = 77/108 (71.30%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEV 326
            DA +  F+PEF+NR+D+ ++F PL ++Q++ IV +Q+ ++ +R+A R++ + V+D+A   L   GY+P YG RP++R+IQQ + ++LAK +L GE +D   + +D ++
Sbjct:  732 DAVKRAFKPEFVNRLDDVVIFDPLSQEQLTHIVEIQIAQLAQRLAARRLTLAVSDSAKLWLAERGYEPAYGARPLRRLIQQAIGDQLAKKLLSGEVRDGSEVHVDADL 839          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            FRPEF+NR+DE +VF PL ++ I  I  +QL R+ KR+     ++  TDA +  +G +GYDP YG RP+KR IQQ +EN LA+ IL G+      + ID
Sbjct:  747 FRPEFINRIDETVVFHPLGKENIREIATIQLARLIKRMESHGYQLHFTDACLDFIGEVGYDPVYGARPLKRAIQQEIENPLAQQILSGKLLPNQLVTID 845          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20
Identity = 42/103 (40.78%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVT 329
            F+PEF+NR+DE +++  L  +QI  IV +Q++ +++R+ADR++ ++++D A + L   GYDP YG RP+KR IQ+ +++ LA  +L G+F++ DT+ +D  V+
Sbjct:  754 FKPEFLNRIDEIVIYHALPLEQIKKIVDIQVECLKQRLADRRIVLELSDKAREYLSREGYDPAYGARPLKRTIQRKIQDPLALALLEGKFQEGDTVRVDLSVS 856          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_PHOLL3.726e-2145.54Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB_CAUCR3.726e-2142.74Chaperone protein clpB OS=Caulobacter crescentus G... [more]
CLPB_SHEON6.355e-2147.19Chaperone protein clpB OS=Shewanella oneidensis GN... [more]
CLPB_NEIMB6.355e-2142.57Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_BACTN6.355e-2146.46Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]
CLPB2_THEEB6.355e-2145.19Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB1_SYNY36.355e-2146.08Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB_CORDI8.300e-2138.89Chaperone protein clpB OS=Corynebacterium diphther... [more]
CLPB_PASMU1.084e-2046.46Chaperone protein clpB OS=Pasteurella multocida GN... [more]
CLPB_GEOSL1.084e-2040.78Chaperone protein clpB OS=Geobacter sulfurreducens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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