DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10087 contig Ccv1_Contig10087:4..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            D  R  FRPEF+NRVD+ IVF  L    + SIV +QL  +++R+A+R++ + +T+ A   L  LGYDP YG RP++R I QY+E  LA+ IL G+ +D   + +D
Sbjct:  734 DELRGEFRPEFLNRVDDIIVFDALTAKDLQSIVDIQLGGLRRRLAERRITLHLTEDAKDKLAELGYDPAYGARPLRRTISQYIETPLAREILGGQIQDGSVLNVD 838          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_TREDE (Chaperone protein clpB OS=Treponema denticola GN=clpB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.416e-20
Identity = 45/102 (44.12%), Postives = 70/102 (68.63%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            R  FRPEF+NR+DE + F  L+++ I  IV +QL  V +R+  R++ ++V+D A   L  +GYDP +G RP+KR IQ  +EN+LA+ +L G+F +  TI++D
Sbjct:  747 RDNFRPEFLNRIDEILTFNRLEKEHIRKIVDIQLRSVAERLQARRLGLKVSDKAKDFLADIGYDPMFGARPLKRAIQAELENKLAREVLEGKFPEGSTILVD 848          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.416e-20
Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 338
            FRPEF+NR+DE IVF  L +  +  I ++QL+R+++R+  R++ + V + AI  L  LGYDP +G RP+KR IQ Y+EN LA+ +L G++  + TI I  + T F+
Sbjct:  753 FRPEFINRIDEAIVFHGLAKTHMYRIAQIQLERLRQRLQTRELLLSVEEDAINQLVELGYDPLFGARPLKRAIQNYIENPLAQALLAGQYLPQSTITIGFDGTNFT 858          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CORGL (Chaperone protein clpB OS=Corynebacterium glutamicum GN=clpB PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 43/105 (40.95%), Postives = 74/105 (70.48%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            DA +  F+PEF+NR+D+ ++F  L  +Q++SIV +Q+ ++  R+A R++ ++V+D+A   L   GYDP YG RP++R+IQQ + + LAK +L G  +D D +++D
Sbjct:  734 DAVKMAFKPEFVNRLDDVVIFDRLSPEQLTSIVDIQIKQLTDRLAGRRLNLRVSDSAKAWLAERGYDPAYGARPLRRLIQQAIGDTLAKELLAGNVRDGDGVLVD 838          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.415e-20
Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            FRPE +NR+DE +VF  LD+  I SI ++QL  ++KR+  + +++ V+DAA+ ++   G+DP YG RP+KR IQ  +EN LAK +L G +  E  I ++ +
Sbjct:  752 FRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLAVSDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIRVEAD 852          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.415e-20
Identity = 46/104 (44.23%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            R  FRPEF+NRVDE I+F+PL  ++I  IV   +  +Q R+ADR + +++TDAA + +   G+DP YG RP+KR +Q+ VE +LA+ ++ G   D   +V+D E
Sbjct:  754 RGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVE 857          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.119e-20
Identity = 54/136 (39.71%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSSDASAADNQE 419
            R+ FRPEF+NRVDE I+F  L R+ + +IV +Q+ R+Q  ++DRK+ +Q+ D A + L + GYDP YG RP+KRVIQ+ V++ LA+ IL G+  D   +    ++TA S+      +L FR +  +  A+  + ++
Sbjct:  746 RASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAREWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDILDGSLV----KITAGSD------RLNFRPISGAFSAAEPERED 871          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.119e-20
Identity = 54/136 (39.71%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSSDASAADNQE 419
            R+ FRPEF+NRVDE I+F  L R+ + +IV +Q+ R+Q  ++DRK+ +Q+ D A + L + GYDP YG RP+KRVIQ+ V++ LA+ IL G+  D   +    ++TA S+      +L FR +  +  A+  + ++
Sbjct:  746 RASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAREWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDILDGSLV----KITAGSD------RLNFRPISGAFSAAEPERED 871          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 314
            +  RS FRPEF+NR+D+ I+F  L RD++ +IV +QL R+   +ADRK+ +++ + A   L + GYDP YG RP+KRVIQ+ V++ LA+ IL GE  D   + +
Sbjct:  745 ERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADRKITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEIPDGSRVKV 848          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: HSP78_SCHPO (Heat shock protein 78, mitochondrial OS=Schizosaccharomyces pombe GN=hsp78 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.026e-20
Identity = 44/105 (41.90%), Postives = 69/105 (65.71%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            D  +  + PEF+NR+D+ IVF  L    +  IV ++LD VQ+R+ DR++ + VT+AA + L   GY P YG RP+ R+IQ+ + N +A  I++GE K ++ +VID
Sbjct:  677 DVVQKYYPPEFLNRIDDQIVFNKLSEKNLEDIVNVRLDEVQQRLNDRRIILTVTEAARKWLAEKGYSPAYGARPLNRLIQKRILNTMAMKIIQGEIKSDENVVID 781          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_DEIRA1.084e-2044.76Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_TREDE1.416e-2044.12Chaperone protein clpB OS=Treponema denticola GN=c... [more]
CLPB_DICNO1.416e-2044.34Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]
CLPB_CORGL1.849e-2040.95Chaperone protein clpB OS=Corynebacterium glutamic... [more]
CLPB_NEIMA2.415e-2042.57Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_BACCR2.415e-2044.23Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_BRUSU4.119e-2039.71Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_BRUME4.119e-2039.71Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_AGRT55.380e-2045.19Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
HSP78_SCHPO7.026e-2041.90Heat shock protein 78, mitochondrial OS=Schizosacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
back to top