DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_RICFE (Chaperone protein clpB OS=Rickettsia felis GN=clpB PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.487e-19
Identity = 42/104 (40.38%), Postives = 73/104 (70.19%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            +++F+PEF+NR+DE I+F  L+R+ I  IV++QL+ ++K +  + + ++  ++A+  L   GYDP++G RP+KR+IQ+ ++N LAK IL GE    +T+ I  E
Sbjct:  745 KAVFKPEFLNRLDEIILFHRLNRNNIHDIVKIQLESLKKILLAQNILLEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEISSGNTVKIARE 848          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.487e-19
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE--VTAFSNGQLP 353
            R+ FRPEF+NRVDE I+F  L + ++  IV +Q  R+ K + DRK+ + +  AA   L   G+DP YG RP+KRVIQ+ V++ LA+ IL G  KD D + I  E  V  F NG+ P
Sbjct:  747 RAHFRPEFLNRVDEIILFHRLQKSEMGRIVDIQFARLTKLLEDRKIVLDLDAAARDWLAEKGWDPAYGARPLKRVIQRSVQDPLAEMILEGSVKDGDHVAISAEGGVLTF-NGKPP 861          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.487e-19
Identity = 41/91 (45.05%), Postives = 64/91 (70.33%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFK 293
            FRPEF+NRVDE +VF PL ++ I  I  +Q++R+  R+ ++  ++ V ++A+  +   G+DP YG RP+KR IQQY+EN LA+ IL G+ +
Sbjct:  749 FRPEFINRVDETVVFHPLGQENIKHIASIQIERLVNRLKEKDYELTVQESALDFVAKAGFDPVYGARPLKRAIQQYIENPLAQEILSGKLE 839          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.487e-19
Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 338
            R  FRPEF+NRVDE ++F+PL   QI+ IV L L R++ R+A+RK+ +++ D A   +    YDP YG RP++R +Q  +E  LA+ ++ GE +D  T+ +D    A S
Sbjct:  753 RRHFRPEFLNRVDETVLFKPLLPAQIARIVELLLGRLRGRLAERKIDIRLGDVARDFIAKAAYDPVYGARPLRRYLQHNIETPLARKLIAGELRDGTTVEVDVVDDALS 861          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 43/102 (42.16%), Postives = 69/102 (67.65%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            R  FRPE +NR+DE ++F PL  +Q+  + RLQ+  V  R+A+R + + VTDAA+ ++ SL YDP YG RP++R I++ V  +L+K +++ E  +  T+ ID
Sbjct:  749 RRHFRPELLNRLDEIVIFDPLSHEQLRKVARLQMKDVAVRLAERGVALAVTDAALDVILSLSYDPVYGARPIRRWIEKRVVTQLSKMLIQEEIDENCTVYID 850          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 43/111 (38.74%), Postives = 78/111 (70.27%), Query Frame = 3
Query:    6 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 338
            A R+ F+PEF+NR+D+ ++F+ L+ +++  IV +QL ++ KR+A R++++QV+  A + L   G+DP YG RP++R++QQ + ++LAK +L G+  D DT+ ++    A S
Sbjct:  734 AVRATFKPEFINRLDDVLIFEGLNPEELVRIVDIQLAQLGKRLAQRRLQLQVSLPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLAGQVHDGDTVPVNVSPDADS 844          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_MYCBO (Chaperone protein clpB OS=Mycobacterium bovis GN=clpB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 43/111 (38.74%), Postives = 78/111 (70.27%), Query Frame = 3
Query:    6 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 338
            A R+ F+PEF+NR+D+ ++F+ L+ +++  IV +QL ++ KR+A R++++QV+  A + L   G+DP YG RP++R++QQ + ++LAK +L G+  D DT+ ++    A S
Sbjct:  734 AVRATFKPEFINRLDDVLIFEGLNPEELVRIVDIQLAQLGKRLAQRRLQLQVSLPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLAGQVHDGDTVPVNVSPDADS 844          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_RICCN (Chaperone protein clpB OS=Rickettsia conorii GN=clpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 41/104 (39.42%), Postives = 74/104 (71.15%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            +++F+PEF+NR+DE I+F  L+R+ I  IV++QL+ ++K +  + + ++  ++A+  L   GYDP++G RP+KR+IQ+ ++N LAK IL GE     T+ I+++
Sbjct:  745 KAVFKPEFLNRLDEIILFHRLNRNNIHDIVKIQLESLKKILLAQNIILEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEISSGKTVKINSK 848          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            F+PEF+NRVD+ I+F+PL  + I  I+ + L  V+ R+ +R + ++VTD A ++L   GYDP YG RP+KR I   +E E+AK I+ GE  D    +ID
Sbjct:  757 FKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNITLEVTDRAKEILAEEGYDPVYGARPLKRYISNVLETEIAKKIIAGEIYDGSVALID 855          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_RICTY (Chaperone protein clpB OS=Rickettsia typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.769e-19
Identity = 42/104 (40.38%), Postives = 72/104 (69.23%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            R++F+PEF+NR+DE I+F  L+R+ I  IV++QL  ++K +  + + ++  ++A+  L   GYDP++G RP+KR+IQ+ ++N LAK IL G+    +T+ I  E
Sbjct:  745 RAVFKPEFLNRLDEIILFHRLNRNNIYDIVKIQLGSLKKILLQQNIILEFNESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGKISSGNTVKIARE 848          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_RICFE3.487e-1940.38Chaperone protein clpB OS=Rickettsia felis GN=clpB... [more]
CLPB_RHOPA3.487e-1945.69Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
CLPB_PHOPR3.487e-1945.05Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_DESVH3.487e-1942.20Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
HS101_ORYSJ4.554e-1942.16Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
CLPB_MYCTU4.554e-1938.74Chaperone protein clpB OS=Mycobacterium tuberculos... [more]
CLPB_MYCBO4.554e-1938.74Chaperone protein clpB OS=Mycobacterium bovis GN=c... [more]
CLPB_RICCN5.948e-1939.42Chaperone protein clpB OS=Rickettsia conorii GN=cl... [more]
CLPB_CLOPE5.948e-1944.44Chaperone protein clpB OS=Clostridium perfringens ... [more]
CLPB_RICTY7.769e-1940.38Chaperone protein clpB OS=Rickettsia typhi GN=clpB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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