DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10087 contig Ccv1_Contig10087:4..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.769e-19
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 314
            R+ FRPEF+NRVDE I+F  L R  +  IV +Q  R++  + DRK+ + +   AI+ L + GYDP YG RP+KRV+Q+ +++ LA+ IL GE  D  T+ +
Sbjct:  746 RASFRPEFLNRVDEVILFHRLRRKDMDRIVEIQFKRLESLLVDRKITLSLDHEAIEWLAAKGYDPAYGARPLKRVMQKELQDPLAEKILLGEILDGSTVKV 846          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.325e-18
Identity = 40/101 (39.60%), Postives = 70/101 (69.31%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 314
            +  FRPEF+NR+DE IVF  L+++ +  IV L + ++QKR+ ++ + + +TD AI+ + + G+DP YG RP++R IQ+ +E+ L++ +LRG  + E  + I
Sbjct:  697 KKAFRPEFLNRIDETIVFHSLEKEHMKDIVTLMVQQLQKRLKEQDLHLSLTDKAIEKIANEGFDPEYGARPLRRSIQKNIEDLLSEELLRGAIEKEQQVKI 797          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB1_CHLTE (Probable chaperone protein clpB 1 OS=Chlorobium tepidum GN=clpB1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.731e-18
Identity = 39/100 (39.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   24 RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            RPEF+NR+DE I+F PL R+ +  IV +Q +R+++    +++ ++++D A+  L   G+DP +G RP+KRV+Q+ + N L++ IL G+  ++DT+ I  E
Sbjct:  330 RPEFLNRIDEVILFTPLTRENLREIVTIQFNRIKETARRQRITLEISDEALMWLAKTGFDPAFGARPLKRVMQRQITNRLSEMILAGQVGEDDTVEIGLE 429          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: HSP98_NEUCR (Heat shock protein hsp98 OS=Neurospora crassa GN=hsp98 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.260e-18
Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD--RKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDED---TIVIDTEVTAFSN 341
            +A R+ F PEF+NR+   ++F  L R +I  IV L++  +QKR+ D  R +K++V++ A   LG+LGY P YG RP++RV+++ V N LA  ILRG  +D +    +V D ++T   N
Sbjct:  775 NALRNYFLPEFLNRISSIVIFNRLTRREIRKIVELRIAEIQKRLQDNDRNVKIEVSEEAKDKLGALGYSPAYGARPLQRVLEKEVLNRLAVLILRGSIRDGEVARVVVQDGKITVLPN 892          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.952e-18
Identity = 38/102 (37.25%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            ++ F+PEF+NR+DE I+F+ L ++ +  IV+LQ+D+V+ R+ D+ +++++ +  I  +   GY+P YG RP+KR+IQ  +E +LAK IL+ + ++     +D
Sbjct:  754 KNYFKPEFLNRLDEQIIFKSLKKEDLKKIVKLQIDKVKARLKDKGLEIELNEKVIDWIADKGYNPIYGARPIKRIIQTKLETKLAKMILKSKSEERSHYQLD 855          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_TROWT (Chaperone protein clpB OS=Tropheryma whipplei (strain Twist) GN=clpB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.855e-18
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            D  R  FRPEF+NR+DE ++F+PL +  I  IV L ++ + KRI DR++ + V++   + L   GYD  YG RP++R+IQ+ +E+ LAK I+ G   D  T   D
Sbjct:  589 DEVRRTFRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSEDLRRWLSKSGYDVIYGARPLRRLIQREIEDRLAKLIIEGLIHDGQTASFD 693          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_TROW8 (Chaperone protein clpB OS=Tropheryma whipplei (strain TW08/27) GN=clpB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.855e-18
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            D  R  FRPEF+NR+DE ++F+PL +  I  IV L ++ + KRI DR++ + V++   + L   GYD  YG RP++R+IQ+ +E+ LAK I+ G   D  T   D
Sbjct:  583 DEVRRTFRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSEDLRRWLSKSGYDVIYGARPLRRLIQREIEDRLAKLIIEGLIHDGQTASFD 687          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.589e-18
Identity = 42/101 (41.58%), Postives = 67/101 (66.34%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            FRPEF+NR+DE IVF  L++  ++ IV L  D++ KR+ ++ + +++TDAA   +   G D  YG RP++R IQ++VE+ L++ +LRG       IV+D E
Sbjct:  697 FRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVE 797          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: HS104_SCHPO (Heat shock protein 104 OS=Schizosaccharomyces pombe GN=hsp104 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.465e-17
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD--RKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDT 305
            ++ R  FRPEF+NR+   ++F  L R  I +IV  ++  VQKR+    R +K++V+D A  LLGS GY P YG RP+ RVIQ  V N +A  IL G+ +D++T
Sbjct:  762 NSIRGFFRPEFLNRISSIVIFNRLRRVDIRNIVENRILEVQKRLQSNHRSIKIEVSDEAKDLLGSAGYSPAYGARPLNRVIQNQVLNPMAVLILNGQLRDKET 864          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.465e-17
Identity = 40/104 (38.46%), Postives = 68/104 (65.38%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            +  FRPEF+NRVDE IVF+ L +D++  I  + L  + +R+  + + +QVT+    LL   GY+P+YG RP++R + + +E+ LA+ +L G+ K+ D  +ID +
Sbjct:  731 KQYFRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKEGDNAMIDVD 834          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_RHILO7.769e-1944.55Chaperone protein clpB OS=Rhizobium loti GN=clpB P... [more]
CLPB_OCEIH1.325e-1839.60Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPB1_CHLTE1.731e-1839.00Probable chaperone protein clpB 1 OS=Chlorobium te... [more]
HSP98_NEUCR2.260e-1840.68Heat shock protein hsp98 OS=Neurospora crassa GN=h... [more]
CLPB_PROMA2.952e-1837.25Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_TROWT3.855e-1841.90Chaperone protein clpB OS=Tropheryma whipplei (str... [more]
CLPB_TROW83.855e-1841.90Chaperone protein clpB OS=Tropheryma whipplei (str... [more]
CLPC_BACSU8.589e-1841.58Negative regulator of genetic competence clpC/mecB... [more]
HS104_SCHPO1.465e-1744.66Heat shock protein 104 OS=Schizosaccharomyces pomb... [more]
CLPC_CYACA1.465e-1738.46ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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