DY258240

Overview
NameDY258240
Unique NameDY258240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1330
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY258240 vs. ExPASy Swiss-Prot
Match: FBXL4_BOVIN (F-box/LRR-repeat protein 4 OS=Bos taurus GN=FBXL4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.808e-11
Identity = 65/217 (29.95%), Postives = 101/217 (46.54%), Query Frame = 1 
Query:    4 VGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSV-SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLES---CEAGLA-------KVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVANNCPLLCDLDVSKCAVTD 621
            + + CPNL+   L  C  L        AK    L+ L L    ++ Q     S+LN    L+ LSL SC+ I+D ++    + + CK LR+L +  C    ++ +A L   CP L+ +DL         G+ P L+S   C A LA       K+ L+   ++ D  +  +A  +   L  L++ G R +S ASL  +  +C  L  LDVS C+  D
Sbjct:  396 ISEMCPNLQDLNLSSCDKLPPQAFSHIAKLC-GLKRLVLYRT-KVEQTALL-SILNFCSDLQHLSLGSCVMIEDYDVTASMIGAKCKKLRTLDLWRCKNITESGIAELASGCPLLEELDL---------GWCPTLQSSTGCFARLARQLPNLQKLFLTANRSVCDTDIEELAS-NCTRLRQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQID 599
[Close]
BLAST of DY258240 vs. ExPASy Swiss-Prot
Match: JHD1_DROME (JmjC domain-containing histone demethylation protein 1 OS=Drosophila melanogaster GN=Jhd1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.585e-11
Identity = 59/187 (31.55%), Postives = 95/187 (50.80%), Query Frame = 1 
Query:  247 VSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVL---ESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVANNCPLLCDLDVSKC-AVTDFGIASLAHGNYLNLQI--LSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAISTNSV 789
            V+   +L++LS++NCP    A LA+   LCP LQ +DLS ++G+ DA    +L   +    GL+         L D             L+++ L G   ISD ++  +  + P L  LD+S C  +TD G+A +        ++  L+LS C +VS+ +L  L K  + L+ L+L+H   +ST SV
Sbjct: 1144 VARLPALKNLSLQNCPI--QAVLALHTCLCPPLQTLDLSFVRGLNDAAIRDILSPPKDSRPGLS----DSKTRLRD-------------LKVMKLAG-TDISDVAVRYITQSLPYLRHLDLSSCQRITDAGVAQIGTSTTATARLTELNLSACRLVSENALEHLAKC-EGLIWLDLRHVPQVSTQSV 1309
The following BLAST results are available for this feature:
BLAST of DY258240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
FBXL4_BOVIN5.808e-1129.95F-box/LRR-repeat protein 4 OS=Bos taurus GN=FBXL4 ... [more]
JHD1_DROME7.585e-1131.55JmjC domain-containing histone demethylation prote... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258240 ID=DY258240; Name=DY258240; organism=Citrus clementina; type=EST; length=1330bp
GCTGTGGGCAAGGGGTGCCCAAATTTGAAGCAGTTCTGCCTCCGAAAATG
TGCCTTTTTATCTGACAATGGACTGATCTCTTTTGCTAAAGCTGCTTTCT
CACTTGAAAGCCTTCAGTTGGAAGAGTGCCACAGGATCACCCAACTTGGG
TTTTTTGGTTCCCTTTTAAACTGTGGTGAAAAGTTGAAGGCTTTATCATT
GGTGAGCTGCTTGGGGATTAAGGATCAAAATCTGGGTGTCCGTTCAGTGT
CTCCCTGCAAATCCTTGCGATCATTGTCCATCCGTAACTGTCCTGGATTT
GGTGACGCAAGCCTGGCTGTGTTGGGGAAATTGTGCCCTCAGTTGCAGAA
TGTTGATTTGAGTGGGCTTCAGGGTGTAACAGATGCTGGGTTTTTACCAG
TGCTTGAGAGTTGTGAGGCTGGTCTTGCAAAGGTTAATCTTAGTGGTTGT
GTGAATTTGACTGACAAAGTTGTTTCAACGATGGCTGAATTGCATGGTTG
GACTCTAGAAATGTTGAATCTCGATGGTTGTAGGAAGATCAGTGATGCAA
GCTTGATGGCAGTTGCAAACAACTGCCCTTTGCTGTGTGATCTCGATGTC
TCTAAGTGTGCTGTCACTGATTTTGGTATTGCATCCCTAGCTCATGGAAA
CTATCTCAATCTGCAGATTCTTTCGCTGTCAGGTTGCTCAATGGTTTCAG
ACAAGAGTTTGGGTGCCCTAAGAAAGTTGGGTCAGACCCTTCTGGGTTTG
AACCTCCAGCACTGCAATGCAATCAGCACCAACTCTGTTGACATGCTTGT
GGAGCAGTTATGGAGGGGGGATGTCCTCTCATAAGCTGCAAAGCATTCCA
CAAACCCCATTCGATAATATGTCGCCCTGAACCAAAGGATGGGGATGAAA
CATACAAGGAGTCTCAAAATTTTCTAGTCAGCTTCGGTAATAGCCACCAC
AGTTTGTTTAATTTTTGGGGCCACTCGCTATGGGTCTTCAATCTCAAAGT
CCCGGTTTCTTTTCCGGGGTGAAATAGCCCCTCCCCTTTTTTGCAGGTTC
CAAAAGAAAAAAATTCGTTAACGCTTTTTAGAGCCCAATTCCGGGTTGCC
CTTTAAGGGCATTTTTCCCGAAAAAACACACCACCGGGTATAATTTTTCG
AGGGATTTCCCCCCCCCCCTATATAGGTGTTTTGGCCGACTTGGGGTGCC
CCGCACCCACGAGGTTTTTCATCCACACCCCCCAGAGGGGGAAACACCAA
ACATCTTTTTGTTTTTTTATCAAATAATTTTAACAACCCCTGCGTTTTTT
TCACAAATGGGCTTTGCTCTCACCCCTTTT
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