DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.117e-44
Identity = 86/169 (50.89%), Postives = 120/169 (71.01%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 712
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  ++FN++  WL +  +++N ++  +L+ NK DL   + V  +  +AFA E G+ F+ETSAK A NVE+AF+  A EI +K+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.117e-44
Identity = 86/169 (50.89%), Postives = 120/169 (71.01%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 712
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  ++FN++  WL +  +++N ++  +L+ NK DL   + V  +  +AFA E G+ F+ETSAK A NVE+AF+  A EI +K+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.117e-44
Identity = 86/169 (50.89%), Postives = 120/169 (71.01%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 712
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  ++FN++  WL +  +++N ++  +L+ NK DL   + V  +  +AFA E G+ F+ETSAK A NVE+AF+  A EI +K+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.117e-44
Identity = 86/169 (50.89%), Postives = 120/169 (71.01%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 712
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  ++FN++  WL +  +++N ++  +L+ NK DL   + V  +  +AFA E G+ F+ETSAK A NVE+AF+  A EI +K+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.117e-44
Identity = 86/169 (50.89%), Postives = 120/169 (71.01%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 712
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  ++FN++  WL +  +++N ++  +L+ NK DL   + V  +  +AFA E G+ F+ETSAK A NVE+AF+  A EI +K+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.117e-44
Identity = 86/169 (50.89%), Postives = 120/169 (71.01%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 712
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  ++FN++  WL +  +++N ++  +L+ NK DL   + V  +  +AFA E G+ F+ETSAK A NVE+AF+  A EI +K+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.191e-43
Identity = 88/182 (48.35%), Postives = 124/182 (68.13%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM--GNQPTANKSSG 745
            Y +LFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +D K IKLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T  ++FN++  WL +   YAN ++  +L+ NK D+   + V  +  + FADE G+ FLETSAK A NVE+AF+  A +I +K+  G+    N+S G
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFG 183          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.555e-43
Identity = 86/169 (50.89%), Postives = 120/169 (71.01%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 712
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R V +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++++ ++  +L+ NK DL   + V  +  +AFA E G+ F+ETSAK A NVE+A++  A EI +K+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKI 171          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.555e-43
Identity = 81/173 (46.82%), Postives = 123/173 (71.10%), Query Frame = 2
Query:  185 SKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELG-IPFLETSAKDAINVEQAFLTMAGEI 700
            ++     +DYLFK++LIGDS+VGK+C++  F    Y ++  +TIGVDF +R++++DGK +K+Q+WDTAGQERFRTIT SYYR AH  II YD+T   +F ++  W++EI++Y   +V  +L+ NKCDL E + V  + A   A++ G +  LETSAK++ N+E+ F+ MA E+
Sbjct:    7 ARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKEL 179          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.555e-43
Identity = 78/162 (48.15%), Postives = 119/162 (73.46%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF 679
            M+ +YD LF+LLLIGDS VGK+CLL RF D+ +  S+ISTIGVDFK++T+++DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++   S+ ++ +W++++D YA + V K+L+ NK D  + + V  +  +  A E G+ F ETSA   +N++++F
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESF 162          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_RABIT9.117e-4450.89Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB9.117e-4450.89Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MACFA9.117e-4450.89Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN9.117e-4450.89Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK9.117e-4450.89Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA9.117e-4450.89Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_DICDI1.191e-4348.35Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB2B_MOUSE1.555e-4350.89Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB19_HUMAN1.555e-4346.82Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB15_MOUSE1.555e-4348.15Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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