DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10095 contig Ccv1_Contig10095:4..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.850e-20
Identity = 61/167 (36.53%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKD-AINVEQAFLTMAGEIKKKM 712
            +KL+++GD  VGKS L ++F    +V  Y  TI  D  ++  E+D +   L + DTAGQE F  +   Y R   G +IVY VT+  SF +V R+   I R  + +S   +LV NK DL+  + V     K  A +  IP++ETSAKD  +NV++ F  +   I++++
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQV 179          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RP1BL_HUMAN (Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.416e-20
Identity = 60/177 (33.90%), Postives = 95/177 (53.67%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADEL-GIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            +KL+++G   VGKS L ++F    +V+ Y  TI   ++   VE+D +   L+I DTAG E+F  +   Y +   G  +VY +T   +FN+++    +I R  + D V  +LV NKCDL + +VV  +  +  A +     FLE+SAK  INV + F  +  +I +K      A K S
Sbjct:    4 YKLVVLGSRGVGKSALTVQFVQGIFVEKYDPTIEDSYR-EQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKS 179          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_HYDMA (Ras-like protein RAS1 OS=Hydra magnipapillata GN=RAS1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.121e-20
Identity = 63/175 (36.00%), Postives = 92/175 (52.57%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKS 739
            FK++++G   VGKS L ++   + +V+ Y  TI  D  I+ V +DG    L I DTAGQE +  +   Y R   G + ++ VT ++SF  +  +  +  R  + D V  +LV NK DL   + V T+     A   GIP++ETSAK    VE+AF T+  EI     NQ    KS
Sbjct:   10 FKMVVVGAGGVGKSALTIQLIQNHFVEDYDPTIE-DSYIKQVVVDGAICILDILDTAGQEEYSAMREHYMRTGEGFLCIFAVTSLKSFQEIDNFRTQALRVKDADKVPMVLVGNKVDL-PKRDVSTKDGNDKALSFGIPYVETSAKTKQGVEEAFFTLVREILADRRNQEGQKKS 182          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.382e-20
Identity = 49/164 (29.88%), Postives = 90/164 (54.88%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +K++++GD  VGKS + ++F   ++VD Y  TI   ++ + + +D +   L I DTAGQE +  +   + R   G +++Y +T   +F  V++   +I R  + +    +LV NKCDL +++ V T   +  A +    F E SAK  + ++ AF  +  EI++
Sbjct:   12 YKIVMVGDGGVGKSAMTIQFIQSTFVDEYDPTIEDSYRKQCL-IDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHFPMVLVGNKCDLEQDRQVPTSAGRDLAKQYNCQFFEASAKQNVRIQDAFHGLVREIRR 174          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.382e-20
Identity = 54/155 (34.84%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF 679
            +K++++G   VGKS L ++F   ++++ Y  TI  DF  + +E+D     L+I DTAG E+F ++   Y +   G I+VY +   +SF ++K   ++I R    + V  +LV NK DL   + V +   +A A E G PF+ETSAK    V++ F
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAP2C_HUMAN (Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.382e-20
Identity = 54/155 (34.84%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF 679
            +K++++G   VGKS L ++F   ++++ Y  TI  DF  + +E+D     L+I DTAG E+F ++   Y +   G I+VY +   +SF ++K   ++I R    + V  +LV NK DL   + V +   +A A E G PF+ETSAK    V++ F
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAP2C_BOVIN (Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.382e-20
Identity = 54/155 (34.84%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF 679
            +K++++G   VGKS L ++F   ++++ Y  TI  DF  + +E+D     L+I DTAG E+F ++   Y +   G I+VY +   +SF ++K   ++I R    + V  +LV NK DL   + V +   +A A E G PF+ETSAK    V++ F
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RSR1_YEAST (Ras-related protein RSR1 OS=Saccharomyces cerevisiae GN=RSR1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.030e-20
Identity = 53/163 (32.52%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYA-NDSVCKLLVWNKCDLVENKVVDTQTAKAFADELG-IPFLETSAKDAINVEQAFLTMAGEI 700
            +KL+++G   VGKSCL ++F    Y+D+Y  TI   ++ +T+E+D K   L+I DTAG  +F  +   Y +   G ++VY VT+ +S   +     ++ R   +D V  +L+ NK DL+  +V+  +     + + G +PF ETSA    NV++ F+ +  +I
Sbjct:    4 YKLVVLGAGGVGKSCLTVQFVQGVYLDTYDPTIEDSYR-KTIEIDNKVFDLEILDTAGIAQFTAMRELYIKSGMGFLLVYSVTDRQSLEELMELREQVLRIKDSDRVPMVLIGNKADLINERVISVEEGIEVSSKWGRVPFYETSALLRSNVDEVFVDLVRQI 165          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAPA_DISOM (Ras-related protein O-Krev OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.181e-20
Identity = 58/177 (32.77%), Postives = 96/177 (54.24%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADEL-GIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            +KL+++G   VGKS L ++F    +V+ Y  TI   ++ + VE+D +   L+I DTAG E+F  +   Y +   G  +VY +T   +FN+++    +I R  + + V  +LV NKCDL + +VV  +  +  A +     FLE+SAK  INV + F  +  +I +K   +    K S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQPCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKAPVEKCKKKKS 179          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAP1A_RAT (Ras-related protein Rap-1A OS=Rattus norvegicus GN=Rap1a PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.199e-19
Identity = 56/166 (33.73%), Postives = 93/166 (56.02%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADE-LGIPFLETSAKDAINVEQAFLTMAGEIKKK 709
            +KL+++G   VGKS L ++F    +V+ Y  TI   ++ + VE+D +   L+I DTAG E+F  +   Y +   G  +VY +T   +FN+++    +I R  + + V  +LV NKCDL + +VV  +  +  A +     FLE+SAK  INV + F  +  +I +K
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASM_MOUSE1.850e-2036.53Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RP1BL_HUMAN2.416e-2033.90Ras-related protein Rap-1b-like protein OS=Homo sa... [more]
RAS1_HYDMA4.121e-2036.00Ras-like protein RAS1 OS=Hydra magnipapillata GN=R... [more]
RAS2_RHIRA5.382e-2029.88Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAP2C_MOUSE5.382e-2034.84Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]
RAP2C_HUMAN5.382e-2034.84Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2... [more]
RAP2C_BOVIN5.382e-2034.84Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C ... [more]
RSR1_YEAST7.030e-2032.52Ras-related protein RSR1 OS=Saccharomyces cerevisi... [more]
RAPA_DISOM9.181e-2032.77Ras-related protein O-Krev OS=Discopyge ommata PE=... [more]
RAP1A_RAT1.199e-1933.73Ras-related protein Rap-1A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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