DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10095 contig Ccv1_Contig10095:4..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.790e-55
Identity = 109/198 (55.05%), Postives = 141/198 (71.21%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK--GQPIQQNSNCC 793
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T  +SF N+ +WL  ID +AN+ V ++L+ NKCD+ + +VV     +  A E GI F ETSAK  IN+E+AFLT+A +I +K    P    +S  V +   G      S CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK---TPVKEPNSENVDISSGGGVTGWKSKCC 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.148e-54
Identity = 109/198 (55.05%), Postives = 141/198 (71.21%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK--GQPIQQNSNCC 793
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T  +SF N+ +WL  ID +AN+ V ++L+ NKCD+ + +VV     +  A E GI F ETSAK  IN+E+AFLT+A +I +K    P    +S  V +   G      S CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRK---TPVKEPNSENVDISSGGGVTGWKSKCC 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.499e-54
Identity = 104/200 (52.00%), Postives = 147/200 (73.50%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNCC 793
            M+  YD+LFKLLLIGDS VGK+CL++RFA+D++ ++YISTIG+DFKIRTVE++GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+T+ +SF N++ W+  I   A+  V +LL+ NKCD+   + V  + A   A E GI F ETSAK ++NV++AF ++A +I  K G + + N S  +        ++N+N C
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDILLKSGGRRSGNHSKPSSTDLKPSDKKNTNKC 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.499e-54
Identity = 108/198 (54.55%), Postives = 140/198 (70.71%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK--GQPIQQNSNCC 793
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+D KI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T  +SF N+ +WL  ID +AN+ V ++L+ NKCD+ + +VV     +  A E GI F ETSAK  IN+E+AFLT+A +I +K    P    +S  V +   G      S CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK---TPVKEPNSENVDISSGGGVTGWKSKCC 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.441e-54
Identity = 99/180 (55.00%), Postives = 139/180 (77.22%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTAN 733
            M+  YD+LFKLLLIGDS VGK+CL++RFA+D++ ++YISTIG+DFKIRTV+++GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+T+ +SF N++ W+  I   A+  V +LL+ NKCD+   + V  + A   A E GI F ETSAK ++NV++AF ++A +I  K G + + N
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 180          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.269e-53
Identity = 101/168 (60.12%), Postives = 131/168 (77.98%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 709
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTIG+DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T  +SF N+ +WL  ID +AN+ V ++L+ NKCD+ + +VV     +  A E  I F ETSAK  IN+E+AFLT+A +I +K
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDILQK 173          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.165e-53
Identity = 101/200 (50.50%), Postives = 145/200 (72.50%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNCC 793
            M+  YD+LFKLLLIGDS VGK+CL++RFA+D++ ++YISTIG+DF+IRTV+++GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+T+ +SF N++ W+  I   A+  V +LL+ NKCD+   + V  + A   A E GI F ETSAK ++NV++AF ++A +I  K G +   N +           ++N+N C
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNNNKPPSTDLKTCDKKNTNKC 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.823e-53
Identity = 98/182 (53.85%), Postives = 138/182 (75.82%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKS 739
            M+  YD+LFKLLLIGDS VGK+CL++RFA+D++  +YISTIG+DFKIRTV+++GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+T+ +SF N++ W+  I   A+  V +LL+ NKCD+   + V  + A+  A E  I F ETSAK ++NV++AF ++A +I  K G + +   S
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNS 182          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.299e-53
Identity = 103/200 (51.50%), Postives = 141/200 (70.50%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQP---TANKSSGTVQM-KGQPIQQNSNCC 793
            YD + K+LLIGDS VGKSCLL+RF +D +  S+I+TIG+DFKI+TV+++GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVT+  +F N+K+W   ++ +AND    LLV NK D+ E +VV     +A A ELGIPF+E+SAK+  NV + F T+A  I++K+ +       N   G + +  G      SNCC
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKSNCC 215          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.083e-52
Identity = 106/198 (53.54%), Postives = 138/198 (69.70%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK--GQPIQQNSNCC 793
            YD LFKLLLIGDS VGK+C+L RF+DD++  ++ISTI +DFKI+TVEL GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T  +SF N+ +WL  ID++AN+ V ++L+ NKCD+   +VV     +  A E  I F ETSAK  IN+E+AFLT+  +I +K    P    +S  V +   G      S CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRK---TPVKEPNSENVDISSGGGVTGWKSKCC 200          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_HUMAN8.790e-5555.05Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA1.148e-5455.05Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB13_MESAU1.499e-5452.00Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB10_CHICK1.499e-5454.55Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB13_HUMAN7.441e-5455.00Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB10_DISOM1.269e-5360.12Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB13_BOVIN2.165e-5350.50Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB13_MOUSE4.823e-5353.85Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
SEC4_YEAST6.299e-5351.50Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RAB10_RAT4.083e-5253.54Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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