DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10095 contig Ccv1_Contig10095:4..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.477e-49
Identity = 95/201 (47.26%), Postives = 139/201 (69.15%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN----QPTANKSSGTVQMKGQP--IQQNSNC 790
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +LV NKCD+ E +V+ T+  +  A++LG  F E SAK+ I+V QAF  +   I  KM +     P+   +S T ++   P  +QQN +C
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSMDTDPSVLGASKTTRLSDTPPLLQQNCSC 219          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.235e-49
Identity = 97/194 (50.00%), Postives = 136/194 (70.10%), Query Frame = 2
Query:  215 LFKLLLIGDSSVGKSCLLLRFAD-DSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNCC 793
            +FK+LLIGDS+VGK+ LLLRF D +++ ++ ++   VD+K + + +DG+T  LQIWDTAGQERFRTITSS+YRGAHG+++ YDVT+  ++NNV  W+ EI RY    V ++LV NKCDL + K+V+   A+ +AD LGIPF+ETSA   +NVE+AF+ MA EI +   N    +K S    + G P +   N C
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIYR---NHIGGSKPSVVKPVCGSPPRTKKNIC 196          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 5.518e-49
Identity = 96/201 (47.76%), Postives = 138/201 (68.66%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN----QPTANKSSGTVQMKGQP--IQQNSNC 790
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +LV NKCD+ E +VV T+  +  A++LG  F E SAK+ I+V QAF  +   I  KM +     P+   SS   ++   P  +QQN +C
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC 219          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.518e-49
Identity = 97/213 (45.54%), Postives = 140/213 (65.73%), Query Frame = 2
Query:  170 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-----QPTANKSSGTVQMKGQPIQQNSNC 790
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLV NKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM        P    +    Q+  Q +  + +C
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDC 218          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.518e-49
Identity = 97/213 (45.54%), Postives = 140/213 (65.73%), Query Frame = 2
Query:  170 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-----QPTANKSSGTVQMKGQPIQQNSNC 790
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLV NKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM        P    +    Q+  Q +  + +C
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDC 218          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.413e-49
Identity = 95/201 (47.26%), Postives = 138/201 (68.66%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN----QPTANKSSGTVQMKGQP--IQQNSNC 790
            +DY+FKLL+IG+SSVGK+  L R+ADD++  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   +LV NKCD+ E +VV T+  +  A++LG  F E SAK+ I+V QAF  +   I  KM +     P+   +S   ++   P  +QQN +C
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDTLDTDPSLLGTSKNTRLSDTPPLLQQNCSC 219          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.606e-48
Identity = 93/201 (46.27%), Postives = 137/201 (68.16%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQ------NSNC 790
            +DY+FKLL+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YDVT  +SFN+V+ W+ +I  Y+ D+   +LV NKCD+ + +V+  +  +  AD+LG+ F ETSAK+ +NV+  F  +   I  KM     A+ +      KGQ +        N+NC
Sbjct:   18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGGQKGQRLTDQPQGTPNANC 218          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.097e-48
Identity = 96/207 (46.38%), Postives = 134/207 (64.73%), Query Frame = 2
Query:  182 PSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT----VQMKGQPIQQNSNC 790
            P       +DY+FKLLLIG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+   ESF  V+ W  +I  Y+ D+   +LV NKCDL + +VV  +  +  AD+LG  F E SAK+ INV+Q F  +   I +KM      + SSG+      +   P  Q S+C
Sbjct:   11 PRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSNGKGPAVGDAPAPQPSSC 217          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.097e-48
Identity = 97/213 (45.54%), Postives = 139/213 (65.26%), Query Frame = 2
Query:  170 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-----QPTANKSSGTVQMKGQPIQQNSNC 790
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLV NKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM        P    +    Q+  Q    + +C
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDC 218          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.097e-48
Identity = 97/213 (45.54%), Postives = 139/213 (65.26%), Query Frame = 2
Query:  170 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-----QPTANKSSGTVQMKGQPIQQNSNC 790
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLV NKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM        P    +    Q+  Q    + +C
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDC 218          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3B_RAT2.477e-4947.26Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RABG1_DICDI3.235e-4950.00Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
RAB3B_HUMAN5.518e-4947.76Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB3A_MACFA5.518e-4945.54Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN5.518e-4945.54Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3B_BOVIN9.413e-4947.26Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB3_DROME1.606e-4846.27Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB3D_HUMAN2.097e-4846.38Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB3A_RAT2.097e-4845.54Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG2.097e-4845.54Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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