DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10095 contig Ccv1_Contig10095:4..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.097e-48
Identity = 97/213 (45.54%), Postives = 139/213 (65.26%), Query Frame = 2
Query:  170 DSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-----QPTANKSSGTVQMKGQPIQQNSNC 790
            DS    K  S++ +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLV NKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM        P    +    Q+  Q    + +C
Sbjct:    6 DSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDC 218          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 2.739e-48
Identity = 93/200 (46.50%), Postives = 133/200 (66.50%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-----QPTANKSSGTVQMKGQPIQQNSNC 790
            +DY+FK+L+IG+SSVGK+  L R+ADDS+  +++ST+G+DFK++T+  + K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN V+ W  +I  Y+ D+   LLV NKCD+ + +VV ++  +  AD LG  F E SAKD INV+Q F  +   I +KM        P    +    Q+  Q    + +C
Sbjct:   19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDC 218          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.041e-47
Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFL--------TMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNC 790
            +DY+FKLL+IG+SSVGK+  L R+ DDS+  +++ST+G+DFK++TV    K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T  ESFN+V+ W  +I  Y+ ++   +LV NKCD+   +VV     +  AD+LG+ F ETSAK+ INV+  F          MA  + K    QP   K       K  P QQ  NC
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLDKDPQQQPKGQKLEANPTQK--PAQQQCNC 219          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.041e-47
Identity = 92/195 (47.18%), Postives = 128/195 (65.64%), Query Frame = 2
Query:  164 SQDSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT 748
            S+    P       +DY+FKLLLIG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+   ESF  V+ W  +I  Y+ D+   +LV NKCDL + +VV  +  +  AD+LG  F E SAK+ INV+Q F  +   I  KM      + S G+
Sbjct:    5 SEPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGS 199          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.041e-47
Identity = 88/193 (45.60%), Postives = 138/193 (71.50%), Query Frame = 2
Query:  155 NGPSQDSLLPSKIMSNE-YDYLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPT 727
            NGP Q S+ PS   + + YD  FK++L+GDS VGK+CLL+RF D +++  ++IST+G+DF+ + +++DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T  +SF+N++ WL EI  YA   V  +L+ NK D  +++VV  +  +  A E G+PF+ETSA+  +NV+ AF  +A E+K++    P+
Sbjct:   47 NGPPQ-SIRPSLGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPS 238          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.319e-47
Identity = 101/210 (48.10%), Postives = 134/210 (63.81%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPI------------QQNSNCC 793
            +EYDYLFK +LIGDS VGKS LL+RF  + +     STIGV+F  R + LD K IK QIWDTAGQER+R ITS+YYRGA G +IVYD+T+  SF+NV RWL E+  +A+ ++  +LV NK DL+  + V T+ A+AFA E  + F+ETSA DA NVE+AF T+  EI + + N+       G     GQ +            + +S CC
Sbjct:    5 DEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSSQCC 214          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.319e-47
Identity = 86/192 (44.79%), Postives = 132/192 (68.75%), Query Frame = 2
Query:  155 NGPSQDSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPT 727
            NGP Q          + YD  FK++L+GDS VGK+CLL+RF D +++  ++IST+G+DF+ + +++DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T  +SF+N++ WL EI  YA   V  +L+ NK D  + +VV  +  +  A E G+PF+ETSAK  +NV+ AF  +A E+K++    P+
Sbjct:   44 NGPPQSGRPSLGGTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPS 235          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 6.746e-47
Identity = 91/195 (46.67%), Postives = 127/195 (65.13%), Query Frame = 2
Query:  164 SQDSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT 748
            S+    P       +DY+FKLLLIG+SSVGK+  L R+ADDS+  +++ST+G+DFK++TV    K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+   ESF  V+ W  +I  Y+ D+   +LV NKCDL + +VV  +  +  A +LG  F E SAK+ INV+Q F  +   I  KM      + S G+
Sbjct:    5 SEPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGS 199          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.810e-47
Identity = 94/182 (51.65%), Postives = 127/182 (69.78%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM--GNQPTANKSSG 745
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++AN ++  +L+ NKCDL   + V T+  + FA E G+ FLETSA+ A NVE+AF+  A EI KK+  G    +N+S G
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYG 184          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.810e-47
Identity = 94/182 (51.65%), Postives = 127/182 (69.78%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM--GNQPTANKSSG 745
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++AN ++  +L+ NKCDL   + V T+  + FA E G+ FLETSA+ A NVE+AF+  A EI KK+  G    +N+S G
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYG 184          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3A_MOUSE2.097e-4845.54Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_BOVIN2.739e-4846.50Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB3_CAEEL1.041e-4746.80Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3D_MOUSE1.041e-4747.18Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB26_MOUSE1.041e-4745.60Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
YPT3_SCHPO2.319e-4748.10GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAB26_RAT2.319e-4744.79Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB3D_RAT6.746e-4746.67GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
YPTV4_VOLCA8.810e-4751.65GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE8.810e-4751.65GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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