DY258245

Overview
NameDY258245
Unique NameDY258245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:101..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.118e-74
Identity = 132/244 (54.10%), Postives = 170/244 (69.67%), Query Frame = 1
Query:   85 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDCSN 804
            +  +IS+ +FE +L +RND+ C A+ FYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+NRE G+   DYC     +PC    KY+GRGPIQ+++NYNY   G  +G   +LLNNPDL+A +     V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ PG+NLDC+N
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPG-DYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIG--VNLLNNPDLVAND----AVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCAN 241          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.755e-73
Identity = 129/239 (53.97%), Postives = 166/239 (69.46%), Query Frame = 1
Query:   88 GKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDCSN 804
            G I++RE+FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF R++  +             +YYGRGPIQLT   NY R G+G+G G+DL+NNPDL+AT+     ++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G+NLDC+N
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDP----IISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNN 246          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.512e-71
Identity = 126/239 (52.72%), Postives = 163/239 (68.20%), Query Frame = 1
Query:   88 GKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDCSN 804
            G I++RE+FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF +++  +             +YYGRGPIQLT   NY R G+G+G G++L+NNPDL+AT+     ++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G+NLDC+N
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDP----IISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNN 246          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.862e-70
Identity = 129/247 (52.23%), Postives = 168/247 (68.02%), Query Frame = 1
Query:   61 GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYG-GNDAVRNRIGFFTTFCGQFGIQPGDNLDC 798
            G +G    +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC   E+  +     DP       YYGRGPIQLT  YNY   G+ LG   DL+NNPDL++++     V++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG G   D  ++R+G++  +C  F +  GDN+ C
Sbjct:   19 GASGQQAGVGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPS-----DP------PYYGRGPIQLTHKYNYQLAGDALGL--DLVNNPDLVSSDP----VVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIAC 247          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.415e-69
Identity = 131/239 (54.81%), Postives = 164/239 (68.62%), Query Frame = 1
Query:   82 ELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDC 798
            ++G I++ ++F ++L+ RND RCPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A G  +A GYCF RE     S +           YGRGPIQLT   NY   G+ +G  +DL+NNPDL+AT+      +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG G N  V +RIGF+  +C    + PGDNLDC
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMGSGF-----------YGRGPIQLTGQSNYDLAGQAIG--QDLVNNPDLVATD----ATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDC 238          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.198e-68
Identity = 129/240 (53.75%), Postives = 165/240 (68.75%), Query Frame = 1
Query:   85 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDCSN 804
            +G I++ ++F ++L+ RND RCPA  FYTYDAFI AA +FP FG +G++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQLT   NY + G  +G  ++L+NNPDL+AT+      +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDC N
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNRNNYEKAGTAIG--QELVNNPDLVATD----ATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYN 246          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.259e-67
Identity = 129/240 (53.75%), Postives = 162/240 (67.50%), Query Frame = 1
Query:   85 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDCSN 804
            +G I++ ++F ++L+ RND RCPA  FYTYDAFI AA +FP FG SG++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQLT   NY + G  +   +DL+NNPDL+AT+      +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PGDNLDC N
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNQNNYEKAGNAIR--QDLVNNPDLVATD----ATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYN 246          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 5.032e-67
Identity = 138/285 (48.42%), Postives = 163/285 (57.19%), Query Frame = 1
Query:    4 DGCQSNCNQVVCGECDPDDGTAGDGGE----LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGG-NDAVRNRIGFFTTFCGQFGIQPGDNLDCSNN-----GLMALSD 828
            DGCQS C+    G      G  G GG     L  II   MF+D+L+YRND +CPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HET G WP A G +Y WGYC                                 NYNY  CG+ L     LL  P+L+ T+      ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECG GG N+A  NRIGF+ T+C   G   G NLDC        GL+ L D
Sbjct:   54 DGCQSQCDGGGGGGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCH-------------------------------MNYNYGLCGDDLNL--PLLQEPELVETDP----FIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLLGLKD 301          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 6.572e-67
Identity = 131/249 (52.61%), Postives = 163/249 (65.46%), Query Frame = 1
Query:   61 GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDCSN 804
            G A  G  +G +I++ +F  +L  R++ +CPAR FYTYDAFI AA +FPAFG SG    + +RE+AAFF QT HETTGG   +   ++ WGYCF  E+  A+S            YYGRGPIQLT   NY   G  LG   DL+ NPDL++T+     V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDC N
Sbjct:   26 GAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSP----------PYYGRGPIQLTGQSNYQAAGNALGL--DLVGNPDLVSTD----AVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYN 255          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.239e-65
Identity = 128/240 (53.33%), Postives = 159/240 (66.25%), Query Frame = 1
Query:   85 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDCSN 804
            +G I++ ++F+ +L+ RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYCF RE     + Y           YGRGPIQLT   NY   G+ +   +DL+NNPDL+AT+      +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG G N  V +RIG++        + PGDNLDC N
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLREGNQMGNGY-----------YGRGPIQLTGQSNYDLAGKAIE--QDLVNNPDLVATD----ATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYN 247          
The following BLAST results are available for this feature:
BLAST of DY258245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHID_SOLLC1.118e-7454.10Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIA_SOLCI2.755e-7353.97Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC1.512e-7152.72Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI11_ORYSJ4.862e-7052.23Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC1.415e-6954.81Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIQ_TOBAC1.198e-6853.75Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC2.259e-6753.75Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIB_POPTR5.032e-6748.42Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI8_ORYSJ6.572e-6752.61Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY1.239e-6553.33Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258245 ID=DY258245; Name=DY258245; organism=Citrus clementina; type=EST; length=996bp
TGTGACGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGA
TCCCGACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCT
CAAGGGAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGC
CCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGC
TTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAA
TTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCC
GATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGT
TGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGA
AGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTA
CGGTGCGGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCAGA
CCTTCTTGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTCAG
CAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAA
GTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCG
GCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAAT
GTGGCTACGGTGGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTACC
ACTTTCTGTGGNCAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTC
CAACAACGGCCTTATGGCCTTATCTGATGGCACAATCTATGTGATCATCA
TGATCACCGTTTTTATAAAATAAGCTTAATAAAAGCTACTTATAAAAACT
TTAGATGTCCCACTTGGAGGTGGACAACTAAACTGTTACCCTCTTATTGT
AAGTAAATTAAATAGACTGATCCAACTTGGATCAATGAGTCTTCTA
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