DY258245

Overview
NameDY258245
Unique NameDY258245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:101..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.663e-35
Identity = 93/271 (34.32%), Postives = 132/271 (48.71%), Query Frame = 1
Query:    4 DGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP---NYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRN-RIGFFTTFCGQFGIQPGDNLDC 798
            DGCQS      C       G+ G G  +  +++   F  + + +    C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +C+  E+   S+ YCDP    +PC    KYYGRGP+Q++WNYNY   G  +  G D L +P  +A +     V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C Q G+ PG NL C
Sbjct:   46 DGCQSG----PCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEIN-KSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAI--GFDGLGDPGRVARD----AVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.930e-34
Identity = 91/269 (33.83%), Postives = 135/269 (50.19%), Query Frame = 1
Query:    4 DGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC--RGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDC 798
            D C   C    C +    DGT      +  I+++E F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QL+WNYNY+  G+ L    D LN+PD++  +     ++SFK+++WFW+     +     VI+D   P+          G+G T  IINGG EC       +  R+G++  +C Q G+ PG+NL C
Sbjct:   23 DYCGPGCQAGPCWDPCEGDGTL----TVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKEL--HFDGLNDPDIVGRDP----IISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.787e-33
Identity = 83/249 (33.33%), Postives = 123/249 (49.40%), Query Frame = 1
Query:   67 AGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDC 798
            AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q++WN+NY   G+ +G   D L +PD +A +      +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C QFG+ PG NL C
Sbjct:   78 AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGF--DGLRDPDKVAQDP----TISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.108e-33
Identity = 93/272 (34.19%), Postives = 130/272 (47.79%), Query Frame = 1
Query:    4 DGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRN-RIGFFTTFCGQFGIQPGDNLDC 798
            DGCQS  C     G      G  G GG     +  + F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC    KYYGRGP+Q++WNYNY   G  +G     L +P+ +A    +  V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++  +C Q  + PG NL C
Sbjct:   51 DGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNG--LADPNRVA----QDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECN-GNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.081e-32
Identity = 89/276 (32.25%), Postives = 127/276 (46.01%), Query Frame = 1
Query:    4 DGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPCRGK--YYGRGPIQLTWNYNYLRCG-----EGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGQFGIQPGDNLDC 798
            D C + C Q  C    P      +      I++ +    +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC     Y+GRGPIQL+WN+NY   G     +GLG  E + N+            V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C Q G+  GDNL C
Sbjct:   45 DYCGTGCQQGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDV-----------VVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of DY258245 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.998e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  565 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 702
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of DY258245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_MAIZE8.663e-3534.32Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIT_DIOJA1.930e-3433.83Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_ORYSJ2.787e-3333.33Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE8.108e-3334.19Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU3.081e-3232.25Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY2.998e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258245 ID=DY258245; Name=DY258245; organism=Citrus clementina; type=EST; length=996bp
TGTGACGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGA
TCCCGACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCT
CAAGGGAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGC
CCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGC
TTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAA
TTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCC
GATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGT
TGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGA
AGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTA
CGGTGCGGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCAGA
CCTTCTTGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTCAG
CAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAA
GTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCG
GCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAAT
GTGGCTACGGTGGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTACC
ACTTTCTGTGGNCAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTC
CAACAACGGCCTTATGGCCTTATCTGATGGCACAATCTATGTGATCATCA
TGATCACCGTTTTTATAAAATAAGCTTAATAAAAGCTACTTATAAAAACT
TTAGATGTCCCACTTGGAGGTGGACAACTAAACTGTTACCCTCTTATTGT
AAGTAAATTAAATAGACTGATCCAACTTGGATCAATGAGTCTTCTA
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